RNA id: TU1530507



Basic Information


Item Value
RNA id TU1530507
length 932
RNA type TUCP
GC content 0.46
exon number 2
gene id G1338523
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9060652 ~ 9063146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGTTCCCCACCACTCAGCATAATCTAATACGCCCATTATACCTAttgtggacattgccattggctgcacggagtcGCATTTAGAAATTCTATGCAGCCGTGTTTACAAGTTCGAACACTGGAATGTAATCTACACCTTGATTAGGCTTATAGAAATTTGTCAGTATTTCGTTCTATGATTTTTCATTTTGATGGCCATTATTTCTATATAACCTTTACCCTCTCATTCTGAATGTCTAACgtactcccgagtggcgcagcggtccaagGCATTTTATCAATTGGACTGGGCACCTTTACTACacggtaacaacactacaacactactaatCCATAACGGCTGGTCTGCCGACGGAACAGCACGcgggggctacaacagacttcGTCCGTCACGACGtacctctaaggcccttctgctagccccggcccgctagctgtctgaattgcCGTGTCTCCAGCCAGCttaactactcactggacccctatgatcactcaactaagcatgcctctccttaatgtcattatgccttgtccattgctgttctggttagtgattattgtcttatttcactgtagagcctttaGCCCtgccttagctaacccttcagttccacctcccacacatgcagtgacatcacctggtttctaTGATGTTTCTacagacaatatctctctcatcgtcactctatGCCTAGGTTTatctccactgtattcacatcctaccaaaCCTTTGTCTATTCATTATGCCGTGAATCTAttctatcgtgcccagaaacctgctccttttatactctgttccgaacgtactagacgaccagttcttatagcctttagcagtacccttatcctactcctcctttgttcctctggtgatttagaggttaatccaggcccagaagtgcctagctccactcccattccccttGCGCTct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1530297 lncRNA upstream 46025 9014338 ~ 9014627 (+) True G1338348
TU1530283 lncRNA upstream 74067 8985117 ~ 8986585 (+) False LOC110492815
TU1530281 lncRNA upstream 74177 8985117 ~ 8986475 (+) False LOC110492815
TU1530285 lncRNA upstream 75939 8978243 ~ 8984713 (+) False LOC110492815
TU1530286 lncRNA upstream 92474 8967941 ~ 8968178 (+) True G1338338
TU1530524 lncRNA downstream 21272 9084418 ~ 9084730 (+) True G1338540
TU1530529 lncRNA downstream 21621 9084767 ~ 9123899 (+) False LOC110491321
TU1530531 lncRNA downstream 21621 9084767 ~ 9143672 (+) True LOC110491321
TU1530541 lncRNA downstream 62898 9126044 ~ 9126408 (+) True G1338551
TU1530546 lncRNA downstream 83126 9146272 ~ 9146509 (+) True G1338556
XM_036946097.1 mRNA upstream 6104 9023761 ~ 9054548 (+) False LOC110492816
XM_036946098.1 mRNA upstream 6104 9023761 ~ 9054548 (+) True LOC110492816
XM_036946093.1 mRNA upstream 51866 8984956 ~ 9008786 (+) False LOC110492815
XM_036946094.1 mRNA upstream 51866 8984957 ~ 9008786 (+) False LOC110492815
XM_036946092.1 mRNA upstream 51866 8984960 ~ 9008786 (+) False LOC110492815
XM_036946101.1 mRNA downstream 27998 9091144 ~ 9108207 (+) False LOC110492817
XM_036946102.1 mRNA downstream 27998 9091144 ~ 9108207 (+) False LOC110492817
XM_021564684.2 mRNA downstream 61071 9124217 ~ 9131393 (+) True LOC110491320
XM_021564685.2 mRNA downstream 75384 9138530 ~ 9143672 (+) False LOC110491321
XM_021564686.2 mRNA downstream 75384 9138530 ~ 9143672 (+) False LOC110491321
TU1530284 other upstream 51908 8987824 ~ 9008744 (+) True LOC110492815
TU1530282 other upstream 73746 8985117 ~ 8986906 (+) False LOC110492815
TU1529770 other upstream 421481 8637166 ~ 8639171 (+) True G1337942
TU1529223 other upstream 853279 8206833 ~ 8207373 (+) True G1337438
TU1529215 other upstream 862193 8197762 ~ 8198459 (+) False G1337433
TU1530535 other downstream 29359 9092505 ~ 9094364 (+) True LOC110492817
TU1530561 other downstream 114901 9178047 ~ 9183173 (+) True G1338571
TU1531053 other downstream 562793 9625939 ~ 9626400 (+) True G1339018
TU1531081 other downstream 638829 9701975 ~ 9702380 (+) True G1339045
TU1531596 other downstream 996732 10059878 ~ 10060130 (+) True G1339525

Expression Profile