RNA id: TU1531041


Basic Information

Item Value
RNA id TU1531041
length 210
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1339006
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9600881 ~ 9601090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagaatgggttgagagagagaatgggttgagagagagagaatgggttgagagagagagaatgggttgagagagagagaatgggttgagagagagaatgggttgagagagagagaatgaagaacaaaccattgtaaatacaacccatattgatgctgatttattttcccttgtgttctataaccatttgtacattgctacaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1530998 lncRNA upstream 68566 9529381 ~ 9532315 (+) False G1338965
TU1530999 lncRNA upstream 68566 9529381 ~ 9532315 (+) True G1338965
TU1530996 lncRNA upstream 71602 9528601 ~ 9529279 (+) True G1338964
TU1530986 lncRNA upstream 93410 9504880 ~ 9507471 (+) True G1338954
TU1530972 lncRNA upstream 111941 9488475 ~ 9488940 (+) False G1338945
TU1531050 lncRNA downstream 21580 9622670 ~ 9623077 (+) True G1339015
TU1531069 lncRNA downstream 67059 9668149 ~ 9669454 (+) True G1339033
TU1531076 lncRNA downstream 81603 9682693 ~ 9683190 (+) True G1339040
TU1531083 lncRNA downstream 103388 9704478 ~ 9704803 (+) True G1339047
TU1531084 lncRNA downstream 104378 9705468 ~ 9705961 (+) True G1339048
XM_036945868.1 mRNA upstream 345005 9238981 ~ 9255876 (+) True LOC118939487
XM_021564694.2 mRNA upstream 363506 9234025 ~ 9237375 (+) False LOC110491327
XM_021564693.2 mRNA upstream 363506 9234155 ~ 9237375 (+) False LOC110491327
XM_036946108.1 mRNA upstream 363506 9234237 ~ 9237375 (+) True LOC110491327
XR_002468805.2 mRNA upstream 429402 9163483 ~ 9171479 (+) True LOC110491323
XM_036946114.1 mRNA downstream 626128 10227218 ~ 10234236 (+) False galk1
XM_036946115.1 mRNA downstream 626128 10227218 ~ 10234236 (+) False galk1
XM_036946116.1 mRNA downstream 626140 10227230 ~ 10237422 (+) True galk1
XM_021564701.2 mRNA downstream 636464 10237554 ~ 10270791 (+) False llgl2
XM_021564704.2 mRNA downstream 636464 10237554 ~ 10270791 (+) False llgl2
TU1530561 other upstream 417708 9178047 ~ 9183173 (+) True G1338571
TU1530535 other upstream 506517 9092505 ~ 9094364 (+) True LOC110492817
TU1530507 other upstream 537735 9060652 ~ 9063146 (+) True G1338523
TU1530284 other upstream 592137 8987824 ~ 9008744 (+) True LOC110492815
TU1530282 other upstream 613975 8985117 ~ 8986906 (+) False LOC110492815
TU1531053 other downstream 24849 9625939 ~ 9626400 (+) True G1339018
TU1531081 other downstream 100885 9701975 ~ 9702380 (+) True G1339045
TU1531596 other downstream 458788 10059878 ~ 10060130 (+) True G1339525
TU1533369 other downstream 2180638 11781728 ~ 11782891 (+) True G1341172
TU1533491 other downstream 2356436 11957526 ~ 11958797 (+) True LOC110492879

Expression Profile