RNA id: TU1531083


Basic Information

Item Value
RNA id TU1531083
length 326
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1339047
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9704478 ~ 9704803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGTATGTTTTCGAATTCTGgattgtggatctgtgtaatctgagggaaatatgtgtctctaatatggtcatacattttgcaggaggttaggaagtgcagctcagctcattctctctctctctctctctcgctctctctctctctctctttctctctctctctctctctctctaataaaaataatatattgttatTAAGTATATTCCTAAAGcagaatgagagggaggagaagagggatggaAGACTTCCGTTAGATTCATCTCTGTTAACACTGACCTAGATAGAgcaggctgctgtgtgtgtgtgtattgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1531076 lncRNA upstream 21288 9682693 ~ 9683190 (+) True G1339040
TU1531069 lncRNA upstream 35024 9668149 ~ 9669454 (+) True G1339033
TU1531050 lncRNA upstream 81401 9622670 ~ 9623077 (+) True G1339015
TU1531041 lncRNA upstream 103388 9600881 ~ 9601090 (+) True G1339006
TU1530998 lncRNA upstream 172163 9529381 ~ 9532315 (+) False G1338965
TU1531084 lncRNA downstream 665 9705468 ~ 9705961 (+) True G1339048
TU1531089 lncRNA downstream 13302 9718105 ~ 9718524 (+) True G1339053
TU1531093 lncRNA downstream 22563 9727366 ~ 9728379 (+) True G1339057
TU1531094 lncRNA downstream 24752 9729555 ~ 9729794 (+) True G1339058
TU1531104 lncRNA downstream 37558 9742361 ~ 9742760 (+) True G1339068
XM_036945868.1 mRNA upstream 448602 9238981 ~ 9255876 (+) True LOC118939487
XM_021564694.2 mRNA upstream 467103 9234025 ~ 9237375 (+) False LOC110491327
XM_021564693.2 mRNA upstream 467103 9234155 ~ 9237375 (+) False LOC110491327
XM_036946108.1 mRNA upstream 467103 9234237 ~ 9237375 (+) True LOC110491327
XR_002468805.2 mRNA upstream 532999 9163483 ~ 9171479 (+) True LOC110491323
XM_036946114.1 mRNA downstream 522415 10227218 ~ 10234236 (+) False galk1
XM_036946115.1 mRNA downstream 522415 10227218 ~ 10234236 (+) False galk1
XM_036946116.1 mRNA downstream 522427 10227230 ~ 10237422 (+) True galk1
XM_021564701.2 mRNA downstream 532751 10237554 ~ 10270791 (+) False llgl2
XM_021564704.2 mRNA downstream 532751 10237554 ~ 10270791 (+) False llgl2
TU1531081 other upstream 2098 9701975 ~ 9702380 (+) True G1339045
TU1531053 other upstream 78078 9625939 ~ 9626400 (+) True G1339018
TU1530561 other upstream 521305 9178047 ~ 9183173 (+) True G1338571
TU1530535 other upstream 610114 9092505 ~ 9094364 (+) True LOC110492817
TU1530507 other upstream 641332 9060652 ~ 9063146 (+) True G1338523
TU1531596 other downstream 355075 10059878 ~ 10060130 (+) True G1339525
TU1533369 other downstream 2076925 11781728 ~ 11782891 (+) True G1341172
TU1533491 other downstream 2252723 11957526 ~ 11958797 (+) True LOC110492879
TU1533979 other downstream 2518970 12223773 ~ 12229068 (+) True G1341689
TU1533962 other downstream 2688151 12392954 ~ 12395733 (+) False LOC110491388

Expression Profile