RNA id: TU1531114


Basic Information

Item Value
RNA id TU1531114
length 312
lncRNA type antisense_over
GC content 0.62
exon number 1
gene id G1339078
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9762459 ~ 9762770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTATGTCAGGGGCCAGGTCTATGGACCCCCTGGTCTCCACAGACTCCATCCTCCTGTGTTGATGTTGGGACTGGGACATGGAGTCGGTACGACACAGGGACACATCATCTCCCTCCGatgtcccccctcctcccccctcatcaTCCTCCGAACTGGACCCACCCTCTCCGGAGAGGAGCGACCGTCGTTCGCCAGACTGACGCTTTGTTCGTTTGAGCGAAGGAGCACGGCCTACGCTGTTCCAGCTTGATCTACGGCTGGTCCAGCCAGAGGCGGAGCTCCACGGGGCGTAAGGGGAGGTGCTACGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1531104 lncRNA upstream 19699 9742361 ~ 9742760 (+) True G1339068
TU1531094 lncRNA upstream 32665 9729555 ~ 9729794 (+) True G1339058
TU1531093 lncRNA upstream 34080 9727366 ~ 9728379 (+) True G1339057
TU1531089 lncRNA upstream 43935 9718105 ~ 9718524 (+) True G1339053
TU1531084 lncRNA upstream 56498 9705468 ~ 9705961 (+) True G1339048
TU1531115 lncRNA downstream 112 9762882 ~ 9764641 (+) True G1339079
TU1531119 lncRNA downstream 14478 9777248 ~ 9777486 (+) True G1339083
TU1531127 lncRNA downstream 29241 9792011 ~ 9792229 (+) True G1339091
TU1531134 lncRNA downstream 45858 9808628 ~ 9808850 (+) True G1339098
TU1531139 lncRNA downstream 51510 9814280 ~ 9814506 (+) True G1339103
XM_036945868.1 mRNA upstream 506583 9238981 ~ 9255876 (+) True LOC118939487
XM_021564694.2 mRNA upstream 525084 9234025 ~ 9237375 (+) False LOC110491327
XM_021564693.2 mRNA upstream 525084 9234155 ~ 9237375 (+) False LOC110491327
XM_036946108.1 mRNA upstream 525084 9234237 ~ 9237375 (+) True LOC110491327
XR_002468805.2 mRNA upstream 590980 9163483 ~ 9171479 (+) True LOC110491323
XM_036946114.1 mRNA downstream 464448 10227218 ~ 10234236 (+) False galk1
XM_036946115.1 mRNA downstream 464448 10227218 ~ 10234236 (+) False galk1
XM_036946116.1 mRNA downstream 464460 10227230 ~ 10237422 (+) True galk1
XM_021564701.2 mRNA downstream 474784 10237554 ~ 10270791 (+) False llgl2
XM_021564704.2 mRNA downstream 474784 10237554 ~ 10270791 (+) False llgl2
TU1531081 other upstream 60079 9701975 ~ 9702380 (+) True G1339045
TU1531053 other upstream 136059 9625939 ~ 9626400 (+) True G1339018
TU1530561 other upstream 579286 9178047 ~ 9183173 (+) True G1338571
TU1530535 other upstream 668095 9092505 ~ 9094364 (+) True LOC110492817
TU1530507 other upstream 699313 9060652 ~ 9063146 (+) True G1338523
TU1531596 other downstream 297108 10059878 ~ 10060130 (+) True G1339525
TU1533369 other downstream 2018958 11781728 ~ 11782891 (+) True G1341172
TU1533491 other downstream 2194756 11957526 ~ 11958797 (+) True LOC110492879
TU1533979 other downstream 2461003 12223773 ~ 12229068 (+) True G1341689
TU1533962 other downstream 2630184 12392954 ~ 12395733 (+) False LOC110491388