RNA id: TU1531643


Basic Information

Item Value
RNA id TU1531643
length 427
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1339572
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 10113119 ~ 10113545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATCTTtgttttcaggtcatttgagagttgttttgaggcccccatgttgccactcttcagaggagagtcaaagagaacaacaacttgcaattggccaccttaaataccttttctcatgattggatgcacttgtctatgaagttcaaggcttaatgagctcaccaaaccaattgtgtgttccacttaatcagtgctaagtagttacaggtattcaaatcaacagaatgacaagggtgcccacatttttgcatagcctatttttcacatctgatttaatttcatacaacttaatattgctacactaaaaatctttgtctggacaataccccagtactcagcttttattagaaaatgaatgGCATGCCACTGTGATCATTTTCTGTGACGACAGAGTAAATTATTATGCAGCCTCAGAGGGGTGCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1531640 lncRNA upstream 1226 10111659 ~ 10111893 (+) True G1339569
TU1531600 lncRNA upstream 49620 10063099 ~ 10063499 (+) True G1339529
TU1531570 lncRNA upstream 73706 10039134 ~ 10039413 (+) True G1339499
TU1531567 lncRNA upstream 76760 10033035 ~ 10036359 (+) True G1339496
TU1531448 lncRNA upstream 93360 10019216 ~ 10019759 (+) True G1339381
TU1531647 lncRNA downstream 5982 10119527 ~ 10119742 (+) True G1339576
TU1531650 lncRNA downstream 7445 10120990 ~ 10121518 (+) True G1339579
TU1531652 lncRNA downstream 8641 10122186 ~ 10122521 (+) True G1339581
TU1531658 lncRNA downstream 17960 10131505 ~ 10131769 (+) True G1339587
TU1531669 lncRNA downstream 34318 10147863 ~ 10148071 (+) True G1339598
XM_036945868.1 mRNA upstream 857243 9238981 ~ 9255876 (+) True LOC118939487
XM_021564694.2 mRNA upstream 875744 9234025 ~ 9237375 (+) False LOC110491327
XM_021564693.2 mRNA upstream 875744 9234155 ~ 9237375 (+) False LOC110491327
XM_036946108.1 mRNA upstream 875744 9234237 ~ 9237375 (+) True LOC110491327
XR_002468805.2 mRNA upstream 941640 9163483 ~ 9171479 (+) True LOC110491323
XM_036946114.1 mRNA downstream 113673 10227218 ~ 10234236 (+) False galk1
XM_036946115.1 mRNA downstream 113673 10227218 ~ 10234236 (+) False galk1
XM_036946116.1 mRNA downstream 113685 10227230 ~ 10237422 (+) True galk1
XM_021564701.2 mRNA downstream 124009 10237554 ~ 10270791 (+) False llgl2
XM_021564704.2 mRNA downstream 124009 10237554 ~ 10270791 (+) False llgl2
TU1531596 other upstream 52989 10059878 ~ 10060130 (+) True G1339525
TU1531081 other upstream 410739 9701975 ~ 9702380 (+) True G1339045
TU1531053 other upstream 486719 9625939 ~ 9626400 (+) True G1339018
TU1530561 other upstream 929946 9178047 ~ 9183173 (+) True G1338571
TU1530535 other upstream 1018755 9092505 ~ 9094364 (+) True LOC110492817
TU1533369 other downstream 1668183 11781728 ~ 11782891 (+) True G1341172
TU1533491 other downstream 1843981 11957526 ~ 11958797 (+) True LOC110492879
TU1533979 other downstream 2110228 12223773 ~ 12229068 (+) True G1341689
TU1533962 other downstream 2279409 12392954 ~ 12395733 (+) False LOC110491388
TU1533964 other downstream 2279409 12392954 ~ 12396813 (+) True LOC110491388

Expression Profile