RNA id: TU1536006


Basic Information

Item Value
RNA id TU1536006
length 2715
RNA type TUCP
GC content 0.42
exon number 3
gene id G1343452
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 13585136 ~ 13634178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGTTTATGGCAGTATGTTTTATTATCTCTTTCACAATGTTAATGCCAGTTACAAGAGCAACAACAGTTGAACGGTCGGTGAAGATATCTAATCAACTACCTGAAAGGTGACACATCCAAAgacataaaaacatgttttcctaaAGTAATACattctaattaaaaaaaatacatgttggaATTTTACACAAAAAAATCGAACATAAGAAAAATGCACGCAACTTGAAGTTACTGTTACACTTTATGATTAAAACCATTTAAAATGCATGTAGCAGTACTCCAATAAGCCATGTGTTGTGTAACAATATGTGTATTTCTCAGCACCAGTATATCTTACAAGACTCTTTTCGATGTTAGGAGAAAGACCAAGGTCAAGGGTTGAAATGGGGACCTGTTTTTATCCTCTTATCTTATCCCAACATGGAGTTAAAAGCCATCAAACACACTCTGTCCACTTGTGACAACCAGTCCCATTGCGGGTTTGGATGTCacacagtatggggttggttgtcacaataTTTGCTAGTAGCTTATTCCTTTACTTGAtcaaacaatatttctaacaaaaTTCAGCATTTTATGCCGTGAGGATAACACGTGACATTTTcagtgaatttgtgtgtgtgtgtgcttgcacatgcgtgtgtgggtgtgtgacagAAAACATGTGTGTTTGAGAGAAAAGCAACGAAGGGAGCTCTTTATATCACAAGAACAAAATAGCTTGCAATTTATTGTATACCGGGGGTGGCAATGTTGAAAGTGACAACCAACCCCGTATTCCATGTGACAACCATCCCCAACTACACCACCCCCCAATGCTAATTAAGATGTTAGTTACCACATGACTTGACCTAGGAATTTAAAtatctctccctttccttttTTCAACAAACATCCTTGTTCATGGATACTCTGATAATTCAAACATTTACAAAGAAAATGTcatacttttaaaaaaaacttttacctATGAAAAACACAAATTCATCTCACCACAATGTTTTGTCATGTTGACATAAATTGACCAGGTGGATGAGTTCTTTCAAATTCATACATTTTAACCTTCCAATTATTACACAGCGCCATTTCAATTGGGAGTAATTAGCACTGTGACAACCATCACCGGTCTCCCCTATATCATATCAGTTTCATTCCTTTGCCTAGGGCATCTGTAAGGTCATCTGTGTCTGAAGAGTGCACCTCGACTCTCCTTGGCTCTTCAGCATTCCTGCCTTTTTTGTCTTCAATTGCGAGGAATTCCAAAATCTCAGAGGCATCACCAACTGTCTTCTTTTTAGTCTGACACCACTCTGCTATCTGCATCAGTATCTTCCTAGCCTTATTTCTGTGCCAACTCTCAATCGGAATCTGGTAGGCCTTTTTGAACTGGGTCACAGCACCATACACGTCTTTCTTCTTGTAGTACAGAAACCGTCCGAAACAGGAGTGGCATTGCTGCTTGTCTGAGTCACTAAGGgactcatctttcagcaggatgGTGAAGATCTTCATCGCCTCCTCCAGCTGGTAGTTGTCTCCGTAAGCCTCAGCCAGGTTCAACCTGAATTGGACGTTGGATGGCTTCAGTTCCACAGCTCTGGAGAAGTGATGGATGCAGAGCTCCATCTTCTCTCTTATCTGGCGTGCGTTGACCCATCTCCCTTCCCTCTTCTGCTCAGACATCTGGTGGAACTGCTGTTTGTGACACAGGCCGATTTGGTAATGCATGAAGGGGGAGTTTACAGACAGTTTGACAGCTTCCTCCAAAACCTCCAGGGTCTCATTGATGTCCGCATGCCTGCAATACTGGGCCAAGTAATATGTGACGTGAGGCACGTCAGGAGACAGTCTGAGGGCCTCTTTGATGAGTTTCATGGACTCATGTCGACTTTGGTTTTGAAGCTGCACAGCTAGTAGGACCATGATTTCAGTGTTATCGGGCTCTAAGGATAAGGCTTTCCTTAGCTGAGTAGCACCTTCAGTATGCGCCAATCTCTCTGTTCCATCCATGGCTAATCCCTCCAACCTGTACAGGACCATGGCATAGCCCACGTTGAAGGATGCATTGTCTGGTTCTTCCTTAAGAGCTTTCTGAAAGCTCTCCTTTGCCCCCAAATAAAATAGCCCCCCAAGCCTTAGAAAACTCCAAGCCTTCTCACCATGTATTGAAGGTAAGCTGCCTTGAATAGCAGTCGTAACACCCTTATTGATGTTTTCCAGCTTTCCAATGTAGGCATCCACATCATTCATGTTCCCTGAGTGATAGTGAACCCATGCAAAGTTAGCATAGGTTACCAGTAACTCTGTATCATCCTGTCTATTCTTCAATGCACTCTCAGCCTTGTGGAGATACTCAAGAGCACTAACATTGTTTTCCTCCAGGTGGCTCAGAAAGGCTAGTAAGTTGAAATATGTGGCATGGTTCAGAGTGCTGAACTTCATGATGCGATCCAGAAGTTTTTCAGGGAGGCTGTCCCGGTCCTTGATGTCATCCTTTTCTATTCCCCATGTAAAGTGACACTCAAGTGCTTTCAGCTTCACTTCCATATCTGTTGTGACAGAAGCGCTATGAGAAAAAAGAAAAATACCCATTAGTATttgttattataatattattattagccCATCATTGTTGTCGTTGTTATCagccatcatcatcctcatcatcatcacaacagcatggacagtaccagtcaaaggtttggacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1535608 lncRNA downstream 165541 13418177 ~ 13419595 (-) True G1343078
TU1535881 lncRNA downstream 168488 13416425 ~ 13416648 (-) True G1343339
TU1535874 lncRNA downstream 184012 13400856 ~ 13401124 (-) True G1343332
TU1535873 lncRNA downstream 184811 13400031 ~ 13400325 (-) True G1343331
TU1535872 lncRNA downstream 186296 13398604 ~ 13398840 (-) True G1343330
TU1536020 lncRNA upstream 3224 13623964 ~ 13646365 (-) True G1343460
TU1535616 lncRNA upstream 116244 13736984 ~ 13739703 (-) True G1343085
TU1536116 lncRNA upstream 179964 13800704 ~ 13802846 (-) True G1343549
TU1536141 lncRNA upstream 214114 13834854 ~ 13848085 (-) True G1343574
TU1536205 lncRNA upstream 332585 13953325 ~ 13953548 (-) True G1343637
XM_021564786.2 mRNA downstream 38625 13545178 ~ 13546511 (-) True ch25h
XM_021564785.2 mRNA downstream 68465 13508655 ~ 13516671 (-) True LOC110491380
XM_021564783.2 mRNA downstream 93161 13482201 ~ 13491975 (-) True ankrd22
XM_021564782.2 mRNA downstream 93164 13482201 ~ 13491972 (-) False ankrd22
XM_021564779.2 mRNA downstream 120741 13421146 ~ 13464395 (-) False rnls
XM_021564804.2 mRNA upstream 38641 13659381 ~ 13667159 (-) True LOC110491395
XM_021564806.2 mRNA upstream 66119 13686859 ~ 13697502 (-) False LOC110491396
XM_021564805.2 mRNA upstream 66119 13686859 ~ 13698803 (-) True LOC110491396
XM_036946237.1 mRNA upstream 120453 13741193 ~ 13753331 (-) False LOC110491398
XM_036946240.1 mRNA upstream 120453 13741193 ~ 13753417 (-) False LOC110491398
TU1535820 other downstream 333468 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 884968 12698986 ~ 12700168 (-) False G1342941
TU1535453 other downstream 884968 12698986 ~ 12700168 (-) True G1342941
TU1533742 other downstream 1565622 11995489 ~ 12019514 (-) False G1341480
TU1533756 other downstream 1565622 11995489 ~ 12019514 (-) True G1341480
TU1537992 other upstream 1630637 15251377 ~ 15253570 (-) True G1345259
TU1538336 other upstream 2078245 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 3303782 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 3303782 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 3303782 16924522 ~ 16929432 (-) False G1347067

Expression Profile