RNA id: TU1536004


Basic Information

Item Value
RNA id TU1536004
length 1730
RNA type TUCP
GC content 0.45
exon number 2
gene id G1343452
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 13585136 ~ 13634178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cCGCTCAGCCCAATGTTTTGTCATTCTGAAATGGATTGTTATTTCAAATAATTCACAAACATAACCTTCCAATTATTACACAGCGCCATTTCAATTGGGAGTAATTAGCACTGTGACAACCATCACCGGTCTCCCCTATATCATTTCAGTTTCATTCCTTTGCCTAGGGCATCTGTAAGGTCATCTGTGTCTGAAGAGTGCACCTCGACTCTCCTTGGCTCTTCAGCATTCCTGCCTTTTTTGTCTTCAATTGCGAGGAATTCCAAAATCTCAGAGGCATCACCAACTGTCTTCTTTTTAGTCTGACACCACTCTGCTATCTGCATCAGTATCTTCCTAGCCTTATTTCTGTGCCAACTCTCAATCGGAATCTGGTAGGCCTTTTTGAACTGGGTCACAGCACCATACACGTCTTTCTTCTTGTAGTACAGAAACCGTCCGAAACAGGAGTGGCATTGCTGCTTGTCTGAGTCACTAAGGgactcatctttcagcaggatgGTGAAGATCTTCATCGCCTCCTCCAGCTGGTAGTTGTCTCCGTAAGCCTCAGCCAGGTTCAACCTGAATTGGACGTTGGATGGCTTCAGTTCCACAGCTCTGGAGAAGTGATGGATGCAGAGCTCCATCTTCTCTCTTATCTGGCGTGCGTTGACCCATCTCCCTTCCCTCTTCTGCTCAGACATCTGGTGGAACTGCTGTTTGTGACACAGGCCGATTTGGTAATGCATGAAGGGGGAGTTTACAGACAGTTTGACAGCTTCCTCCAAAACCTCCAGGGTCTCATTGATGTCCGCATGCCTGCAATACTGGGCCAAGTAATATGTGACGTGAGGCACGTCAGGAGACAGTCTGAGGGCCTCTTTGATGAGTTTCATGGACTCATGTCGACTTTGGTTTTGAAGCTGCACAGCTAGTAGGACCATGATTTCAGTGTTATCGGGCTCTAAGGATAAGGCTTTCCTTAGCTGAGTAGCACCTTCAGTATGCGCCAATCTCTCTGTTCCATCCATGGCTAATCCCTCCAACCTGTACAGGACCATGGCATAGCCCACGTTGAAGGATGCATTGTCTGGTTCTTCCTTAAGAGCTTTCTGAAAGCTCTCCTTTGCCCCCAAATAAAATAGCCCCCCAAGCCTTAGAAAACTCCAAGCCTTCTCACCATGTATTGAAGGTAAGCTGCCTTGAATAGCAGTCGTAACACCCTTATTGATGTTTTCCAGCTTTCCAATGTAGGCATCCACATCATTCATGTTCCCTGAGTGATAGTGAACCCATGCAAAGTTAGCATAGGTTACCAGTAACTCTGTATCATCCTGTCTATTCTTCAATGCACTCTCAGCCTTGTGGAGATACTCAAGAGCACTAACATTGTTTTCCTCCAGGTGGCTCAGAAAGGCTAGTAAGTTGAAATATATGGCATGGTTCAGAGTGCTGAACTTCATGATGCGATCCAGAAGTTTTTCAGGGAGGCTGTCCCGGTCCTTGATGTCATCCTTTTCTATTCCCCATGTAAAGTGACACTCAAGTGCTTTCAGCTTCACTTCCATATCTGTTGTGACAGAAGCGCTATGAGAAAAAAGAAAAATACCCATTAGTATttgttattataatattattattagccCATCATTGTTGTCGTTGTTATCagccatcatcatcctcatcatcatcacaacagcatggacagtaccagtcaaaggtttggacacacatactcattcaagagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1535999 lncRNA downstream 277 13580031 ~ 13617732 (-) True G1343448
TU1536014 lncRNA downstream 9056 13600786 ~ 13608953 (-) True G1343456
TU1536013 lncRNA downstream 10416 13599314 ~ 13607593 (-) True G1343455
TU1535996 lncRNA downstream 26713 13576846 ~ 13591296 (-) True G1343445
TU1536001 lncRNA downstream 28456 13580839 ~ 13589553 (-) True G1343450
TU1535616 lncRNA upstream 102806 13736984 ~ 13739703 (-) True G1343085
TU1536116 lncRNA upstream 166526 13800704 ~ 13802846 (-) True G1343549
TU1536141 lncRNA upstream 200676 13834854 ~ 13848085 (-) True G1343574
TU1536205 lncRNA upstream 319147 13953325 ~ 13953548 (-) True G1343637
TU1536207 lncRNA upstream 321538 13955716 ~ 13955937 (-) True G1343639
XM_021564786.2 mRNA downstream 71498 13545178 ~ 13546511 (-) True ch25h
XM_021564785.2 mRNA downstream 101338 13508655 ~ 13516671 (-) True LOC110491380
XM_021564783.2 mRNA downstream 126034 13482201 ~ 13491975 (-) True ankrd22
XM_021564782.2 mRNA downstream 126037 13482201 ~ 13491972 (-) False ankrd22
XR_005036444.1 mRNA downstream 153614 13421146 ~ 13464395 (-) True rnls
XM_021564804.2 mRNA upstream 25203 13659381 ~ 13667159 (-) True LOC110491395
XM_021564806.2 mRNA upstream 52681 13686859 ~ 13697502 (-) False LOC110491396
XM_021564805.2 mRNA upstream 52681 13686859 ~ 13698803 (-) True LOC110491396
XM_036946237.1 mRNA upstream 107015 13741193 ~ 13753331 (-) False LOC110491398
XM_036946240.1 mRNA upstream 107015 13741193 ~ 13753417 (-) False LOC110491398
TU1535820 other downstream 366341 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 917841 12698986 ~ 12700168 (-) False G1342941
TU1535453 other downstream 917841 12698986 ~ 12700168 (-) True G1342941
TU1533742 other downstream 1598495 11995489 ~ 12019514 (-) False G1341480
TU1537992 other upstream 1617199 15251377 ~ 15253570 (-) True G1345259
TU1538336 other upstream 2064807 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 3290344 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 3290344 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 3290344 16924522 ~ 16929432 (-) False G1347067

Expression Profile