RNA id: TU1537223


Basic Information

Item Value
RNA id TU1537223
length 218
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G1344558
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 14545481 ~ 14587304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGTTTTTtaggggtgtggatcagaaaaacagtcCATATCTAgtttgaccaccatttgcctcatgcgacgctacacatctcctttgtatagagttgatcaggctgttgattccGGTCTtcagaatgttgtcccactccactTCAattgctgtgcgaagttgctggatattgtctgaaactggaacatgctgtcatacagCGCATCCCAAACAgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1537211 lncRNA downstream 27302 14517459 ~ 14518179 (-) True grid1b
TU1536909 lncRNA downstream 32903 14512259 ~ 14512578 (-) True G1344258
TU1536907 lncRNA downstream 34756 14510525 ~ 14510725 (-) True G1344256
TU1536904 lncRNA downstream 36782 14508453 ~ 14508699 (-) True G1344253
TU1536902 lncRNA downstream 37229 14507993 ~ 14508252 (-) True G1344251
TU1537250 lncRNA upstream 868 14588172 ~ 14588401 (-) True G1344585
TU1537252 lncRNA upstream 2606 14589910 ~ 14590122 (-) True G1344587
TU1537264 lncRNA upstream 15196 14602500 ~ 14602949 (-) True G1344599
TU1537267 lncRNA upstream 22673 14609977 ~ 14610206 (-) True G1344602
TU1537272 lncRNA upstream 27761 14615065 ~ 14615419 (-) True G1344607
XR_005036388.1 mRNA downstream 89764 14447197 ~ 14455717 (-) True LOC118939470
XM_036946255.1 mRNA downstream 328206 14213613 ~ 14217275 (-) True dnajc9
XM_021564843.2 mRNA downstream 329175 14213613 ~ 14216306 (-) False dnajc9
XM_021564831.2 mRNA downstream 367311 14168129 ~ 14178170 (-) False LOC110491408
XM_036946263.1 mRNA upstream 408116 14995420 ~ 15041584 (-) True LOC110491419
XM_021564853.2 mRNA upstream 584824 15172128 ~ 15176318 (-) True c16h10orf88
XM_021564871.2 mRNA upstream 604522 15191826 ~ 15196912 (-) True LOC100136179
LOC110491429 mRNA upstream 614111 15201415 ~ 15215187 (-) True LOC110491429
XR_005036448.1 mRNA upstream 618241 15205545 ~ 15212257 (-) False LOC110491427
TU1536004 other downstream 911303 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 924741 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 1293813 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 1845313 12698986 ~ 12700168 (-) False G1342941
TU1537992 other upstream 664073 15251377 ~ 15253570 (-) True G1345259
TU1538336 other upstream 1111681 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 2337218 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 2337218 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 2337218 16924522 ~ 16929432 (-) False G1347067

Expression Profile