RNA id: TU1537267



Basic Information


Item Value
RNA id TU1537267
length 230
lncRNA type intronic
GC content 0.39
exon number 1
gene id G1344602
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 14609977 ~ 14610206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATtctaacctcatagtgtggaaatatatgtaaaacacaggaaaatgagGGGCCTTTAGAGAGGAGTTGTTCATACTTTGTTTCACAAATCAGAGCCAAAGAGATCTCTctctgagtataccaaacattgtGAACACATTCCTTATATTGAGTTGCAAACCCCTTTTGCACTCAGAAGAGCCTcgattcatcagggcatggaatATATGTGGACTATACAAGGTGTCaatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1537264 lncRNA downstream 7028 14602500 ~ 14602949 (-) True G1344599
TU1537252 lncRNA downstream 19855 14589910 ~ 14590122 (-) True G1344587
TU1537250 lncRNA downstream 21576 14588172 ~ 14588401 (-) True G1344585
TU1537223 lncRNA downstream 22673 14545481 ~ 14587304 (-) True G1344558
TU1537211 lncRNA downstream 91798 14517459 ~ 14518179 (-) True grid1b
TU1537272 lncRNA upstream 4859 14615065 ~ 14615419 (-) True G1344607
TU1537274 lncRNA upstream 7919 14618125 ~ 14618515 (-) True G1344609
TU1537281 lncRNA upstream 22981 14633187 ~ 14633395 (-) True G1344616
TU1537415 lncRNA upstream 214508 14824714 ~ 14824965 (-) True G1344750
TU1537418 lncRNA upstream 218850 14829056 ~ 14830294 (-) True G1344753
XR_005036388.1 mRNA downstream 154260 14447197 ~ 14455717 (-) True LOC118939470
XM_036946255.1 mRNA downstream 392702 14213613 ~ 14217275 (-) True dnajc9
XM_021564843.2 mRNA downstream 393671 14213613 ~ 14216306 (-) False dnajc9
XM_021564831.2 mRNA downstream 431807 14168129 ~ 14178170 (-) False LOC110491408
XM_036946263.1 mRNA upstream 385214 14995420 ~ 15041584 (-) True LOC110491419
XM_021564853.2 mRNA upstream 561922 15172128 ~ 15176318 (-) True c16h10orf88
XM_021564871.2 mRNA upstream 581620 15191826 ~ 15196912 (-) True LOC100136179
LOC110491429 mRNA upstream 591209 15201415 ~ 15215187 (-) True LOC110491429
XR_005036448.1 mRNA upstream 595339 15205545 ~ 15212257 (-) False LOC110491427
TU1536004 other downstream 975799 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 989237 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 1358309 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 1909809 12698986 ~ 12700168 (-) False G1342941
TU1537992 other upstream 641171 15251377 ~ 15253570 (-) True G1345259
TU1538336 other upstream 1088779 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 2314316 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 2314316 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 2314316 16924522 ~ 16929432 (-) False G1347067

Expression Profile