RNA id: TU1537992


Basic Information

Item Value
RNA id TU1537992
length 2028
RNA type TUCP
GC content 0.41
exon number 3
gene id G1345259
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 15251377 ~ 15253570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCATTTGTTTATTTACTCAATAAGTCAATCATTTAAAAAGACAAACAACCCCCATTTGCATTCAAATGAAATGATCAAAAACCAAATGTTATGTTCACCATGCTGGCTTGCTTGCCAGAGCCCCGGTCTGTCTAAAAAGCCTTTAAATCACACATATCCCTCAACTCCGGTAGTGTTCCCTAAATATTCTGCGCATTACCGTACATACGACTCACACACACcggaagaatatatatatatatattcaggcATTTAATGCTATCCAGGCAACTTATCTTGTTGAGTTAGTGCATTGAATAATGATGTAACCAATGGCATTAACTTATTTTCTTAAGCGGAGATATTTGTAGTGATCCTTTGTGGCTCAGTTGATCAGAGCAACACGCTAGAAAAGCCAGGGTAGTGTGTTCTACTGCTGAGACCATCCATACGTAAAATGTACGCACGGAAGACTAAGTAGCTTTGGATAaaaacgtctgctaaatggcatatgttatagtagtaacacttATGGAAATCATGGCGATTATCAAAGATgtaacattataataacaataTCTGAAGGATGTGTCTGTTCACTTGGAAGAGTCACGTGAGAATTTTAATAGCAGTTATAATTCCAAAATAGATAAGAACCTTTCACCACTCTTCTTAAACATGAATTCAAGAAATTCCCAAAACACATAATGTTAGCAGTGGAAAATGTCAAAGAACTGGCTTAAACAACCACTGTATACTCTCTATACACGTAAAAGGAGTCTTCGTGTTGGATACTGGGGTATATTTAAACCAAACCATGTGAGATTAATAATTAAGCTTCTGGATATAGACAATATAATTCGACAGTAGGctgggattttttttgtttttatcttAGTATTTTTaaatttcttgttttttttctggTCTCAAACATCTGGACCGACAAAATGGCGCAGTCACCAACTCAATCTGACAAtgtatcggggggggtgtattagaAGACTTCAACGTAACTGATTTGCATTCACATGAGCATGCCAAACACAtttaacacatacaggtatatgaCCTGAGCATACCCATCTACCAGTggaggttgctgaggggaggatgactAATGATGGCTGGAACAGCGCTAATGGAATggcaaacacatagaaaccatgtgttttataccattccactcgagccattaccatgagcttgtcctccccaattaaggtgccaccaacctcctgtgccatCTACCCGTCTACTCCTGTCGACGTAAACACACGTAATCTTTCATATGGATTATGAGTAATGGTCAAGTCCGGCATTAGCTTGCAGCCAGGTGTACGATGCCTGACAGGTATGTCTCTCTACACCATGCAACTACCACATTACAAGTTGTTTATAGTAATTCTTGAATACAAATTACTACCTGCACCTGTGGAAGATGCATGGTATATGAGAAAAAGCAGCACTCCCTAGAATGAAAAGGgtttctttgttgttgttgtagtatccCAGGCTGATGTGTTATTTTACGAGTTGAATTATGACTGAAATGAATACACAGCCATTGAATCTTTTCTGTCCCTGTGGATGAGAGAAAATAAGTCCAGGGAAGGAAGGATTGCAGTTGCTCTCTTATCCTTTTTAAAGAAACAAACCTACACAGAAAATTGTCCAAAACGAAGAAACAAAAACTATATAAAAAACAAACATAACTCAAACGGAAGGAGTTTGCATTTTGGCGCAGTCCAGGCAGTGCTGAGGGGGATAGTTTGGCCTGCTCTTTGTTCGGGTTCTTGTTggatgtggaggggggggggtcagcctTGCACTACCCTGTGCTCTCAGTCCAGCTCAATGGGGCTGCCGTGCTCCTgtgcttcctctccctcctcatcctcaccCTCACCTGAGCCCATCAGGCTGTTCAACAGGTTTCCTAGCAATCCACCATATGATGAAGACTGTTTGGGTGGCACCCCGAAGAAAAGCTGTCCTATCCTGTCGAGATACTGATGCAGCAGGCAGTCAATGTAacaggaggggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1538023 lncRNA downstream 15255 15234285 ~ 15236122 (-) True G1345287
TU1538020 lncRNA downstream 17566 15233076 ~ 15233811 (-) False G1345285
TU1538021 lncRNA downstream 17786 15233076 ~ 15233591 (-) True G1345285
TU1538019 lncRNA downstream 25874 15225277 ~ 15225503 (-) True G1345284
TU1537948 lncRNA downstream 26831 15209845 ~ 15224546 (-) True G1345223
TU1538042 lncRNA upstream 3132 15256702 ~ 15308630 (-) True G1345304
TU1538109 lncRNA upstream 129687 15383257 ~ 15383714 (-) True G1345357
TU1538110 lncRNA upstream 137780 15391350 ~ 15393469 (-) True G1345358
TU1538111 lncRNA upstream 154193 15407763 ~ 15408045 (-) True G1345359
TU1538112 lncRNA upstream 154797 15408367 ~ 15408587 (-) True G1345360
LOC110491429 mRNA downstream 36190 15201415 ~ 15215187 (-) True LOC110491429
XR_005036448.1 mRNA downstream 39120 15205545 ~ 15212257 (-) False LOC110491427
XR_005036449.1 mRNA downstream 39120 15205545 ~ 15212257 (-) False LOC110491427
XR_005036450.1 mRNA downstream 39120 15205545 ~ 15212257 (-) False LOC110491427
XR_005036451.1 mRNA downstream 39120 15205545 ~ 15212257 (-) False LOC110491427
XM_036945851.1 mRNA upstream 1829 15255399 ~ 15258106 (-) False vps35l
XM_036945850.1 mRNA upstream 1829 15255399 ~ 15258527 (-) True vps35l
XM_021564874.2 mRNA upstream 21236 15274806 ~ 15292329 (-) False LOC110491431
XM_021564875.2 mRNA upstream 21236 15274806 ~ 15292329 (-) True LOC110491431
XM_021564884.2 mRNA upstream 68556 15322126 ~ 15350844 (-) True LOC110491434
TU1536004 other downstream 1617199 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 1630637 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 1999709 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 2551209 12698986 ~ 12700168 (-) False G1342941
TU1535453 other downstream 2551209 12698986 ~ 12700168 (-) True G1342941
TU1538336 other upstream 445415 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 1670952 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 1670952 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 1670952 16924522 ~ 16929432 (-) False G1347067
TU1540000 other upstream 1670952 16924522 ~ 16929432 (-) True G1347067

Expression Profile