RNA id: TU1540054


Basic Information

Item Value
RNA id TU1540054
length 2618
lncRNA type intronic
GC content 0.35
exon number 4
gene id G1347109
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 16888502 ~ 16895370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATCAGTGTTTTCCCAATATTAAGGGAAACTCCACGCCGCTAAATTCTTGCCACTGctgaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgcacaaaaggaaacatatatacacactactgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactactgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaaaatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatacacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaatatatacacactaccgctcaaaaggaaacatatatacatactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacatactaccgctcaaaaggaaacatacagtgccttgcgaaagtattcggcccccttgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1539885 lncRNA downstream 193401 16693984 ~ 16695101 (-) True G1346971
TU1539811 lncRNA downstream 308016 16579183 ~ 16580486 (-) True G1346904
TU1539804 lncRNA downstream 329023 16557797 ~ 16559479 (-) True G1346897
TU1539318 lncRNA downstream 416124 16472130 ~ 16472378 (-) True G1346487
TU1539310 lncRNA downstream 424418 16463812 ~ 16464084 (-) True G1346479
TU1539988 lncRNA upstream 29152 16924522 ~ 16926413 (-) False G1347067
TU1539989 lncRNA upstream 29152 16924522 ~ 16926413 (-) False G1347067
TU1539996 lncRNA upstream 29152 16924522 ~ 16926413 (-) False G1347067
TU1539997 lncRNA upstream 29152 16924522 ~ 16926413 (-) False G1347067
TU1539998 lncRNA upstream 29152 16924522 ~ 16926413 (-) False G1347067
XM_021564924.2 mRNA downstream 155398 16728503 ~ 16733104 (-) True LOC110491457
XM_021564925.2 mRNA downstream 155497 16728503 ~ 16733005 (-) False LOC110491457
XM_021564926.2 mRNA downstream 163523 16695214 ~ 16724979 (-) False LOC110491459
XM_036946309.1 mRNA downstream 163523 16695214 ~ 16724979 (-) True LOC110491459
XM_021564922.2 mRNA downstream 206938 16653966 ~ 16681564 (-) True lmf1
XM_036946348.1 mRNA upstream 262944 17158314 ~ 17173932 (-) False LOC110491465
XM_036946345.1 mRNA upstream 262944 17158314 ~ 17173934 (-) False LOC110491465
XM_036946346.1 mRNA upstream 262944 17158314 ~ 17173934 (-) False LOC110491465
XM_036946347.1 mRNA upstream 262944 17158314 ~ 17173934 (-) False LOC110491465
XM_036946352.1 mRNA upstream 410688 17306058 ~ 17352385 (-) False LOC110491470
TU1538336 other downstream 1189239 15698985 ~ 15699263 (-) True G1345561
TU1537992 other downstream 1634932 15251377 ~ 15253570 (-) True G1345259
TU1536004 other downstream 3254324 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 3267762 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 3636834 13251434 ~ 13251668 (-) True G1343278
TU1539993 other upstream 29152 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 29152 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 29152 16924522 ~ 16929432 (-) False G1347067
TU1540000 other upstream 29152 16924522 ~ 16929432 (-) True G1347067
TU1540318 other upstream 299960 17195330 ~ 17196129 (-) True G1347343

Expression Profile