RNA id: TU1539993


Basic Information

Item Value
RNA id TU1539993
length 4256
RNA type TUCP
GC content 0.47
exon number 3
gene id G1347067
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 16924522 ~ 16929432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaagtatGAAAAGCAACACAATGTTGAGTTCAGCTGCTCGGACCTGATCATTAAGATACTAGACTTACACTATTGATGGACATTTTGAACACCGACCGAAACATGCACACACGACACGCAAACCAACTGCACTCGCCATTGCACTATTCCATCTTTTCGCCCACAAGCACAAGGGTAGGCGCTCTACACACGGCTGTAGCTCTGTGACCTACCTCAGAGAATAGGGCCATTGTCATGTCTTTGTGCGTGTAAACACCATTAAAATAAACAACAGCGTTGGATGATTTAAAAAAAGAGGAGAGCGGGGAGGGAAAAAGAAGAAAGCCATTCTACTTGGACTGGTACAAAAAGGGGGAACATACTGTAGCCCTCTCTCTACTATCATAGAATGAAAGGGGGTTTAGGGGGTTGCTCCAGCACGTGTGACAGTAGAGAGGGATGCGTGTGTAATGTATTTTTGTCTGCGTTTGTGTGGACAGTCGATACAGAGGCAGACTCATCCCTATTGTTAAACGGTGTCATTGTGGACTTCGGCTCGCTGGTCTGCGGGTGGGCGTCCCTCACAGCGGAGACTCTCTGGGAGATAAAACGTCTGCCCTCCCATCGCGATCCCACTGTCGGAGTTGTTTACCTATCCCGTTTAAGGTGCGTCTTTCAGAGGGACAACGGCTCAAACGCTCCCTGTCACAATTCCTGTCTGCCTAAACGGCTGACAAACGGCAGGATTTTGTACCGGAAGGGGCCGCTGCCGAAAAGTTTACTCGTCCTGGGAACAATTATCTCCTTTTACCGGTTTTCGAGAGGACCCCTGGTTTGTGTATTAAACACCAGGAGACGTATGCTTAACCTGCGCTGTGGTTGAAGGGTTCTAGTTTGCCCGATTTTTCAAATGTGGCATAAATGGCTCTTGCATAAGGAAGAAGAGATGACTCAAACCTAAAAATGGTAGACACATCTCCAAAACCTTAAAAAGCATATTCAGCCTTGGACATGACGAACTCACCAGCCCCTCAGACAATGATCATATGACAATGGACAGGGACATAAAACACGAGCCTGTCTAGCAATCGGAGAGAAGCAAAAACATTTAAATGGCTTTAGACATCCAATTACTAatcacccccccccaaaatcccctcccctctctctccctgtctgtatgGAGCTCACACACCTCTAGTCACTTGAGGTGGGTTAACACTGGGCTTAATGAAATATTAAAAAGGTGTCTGTACCTGCTGATATTGTTGCCCCTTGGAATAAGATAGAACCTATTTTTGACAAGTTTTCATCCTTCTCTCCGTGGCAAGATGCTCGTCGAAAACCAAATCAGTCACAAAGAACAGAAAGGGGGTAATGAATAATCTATTTCGTACTTTAAAGGCACCCGCTgcttggagggagagaaggagagagagagagagagagagggaacggaaGGAAGGAGGAATGGGCAGACAAAAAGGACAACAAGAGAAAGTAGACAAAAAAAAGGAGAGTGCTGGCAGATGATACCAGGCATCTGCCAAACCAAGGAATCATATGACAGGCCTCCTGTTaaataatacccccccccccctctaaacAAATCATTAGCCCTCCCCCTTTATCTAAAGTTGTTTAATGCCATTTCCTAATGAACATAATAGCCAGAAATAATAATGAAACAAAATACAAACATCTAAACGGAGCCCAGGCAGGGTTGTCGGCGACGCTCAATTATTTCCTTGTCAAGTGGGTCTGTTTTTAATGAGGCCCTGTGGGACTGACAGCTGTCAGTCAGCCCTGACTTTTTGACACCATTACAACTTCAAATAGAGCCGTGCTCGCTGTCTGCCGCGGCCAAGCTGCCTGCCGCGGCCACGCTGCCTGCCGGCTGTCTGCCGCGGCCACGCTGCCTGCCACGCTGTCTGCTGTGGCCACGCTGCCTGCCGCGGCCACGCTGTCTGCCACGCTGTCTGCCGGCTGTCTGCCGCGGCCACGCTGCACGGCAGAAGGGAGGCTGCGGCAGCGCTACAACTCAGCTCACCCTgacaggctgggagagagagagagagagggaggaagacaggggtgagggaaagagggaggacgggtgggggtggagagaggagggaggacgggtgggggtggagagaggagggaggacgggtgggggtggagagagaaaggaggaagggaCCGAGGAGAGAGGACGAGCACACGTAGGCACTCCAGATAGGTACACACAATAATCAGTTGTTTGGCTCATATACACCAACCTCCAGGTATAGATTCTGATTAAAACCAAATCACACAGGTGATTATCTGATGAGGTTGGCAGGgatttctcccccctcctcctcgttTCCTCTCCTTATCCTCTTTTTTACTCTTTCATTATTCCTCAACTTAATGATAACTCGGCCACTGGTTGGCCCATGTGGGATGGAGGGGGAGCCACTATTTTGTTGGTCATTAATTTGAACCTTTGAAGCCGCCGGGCGGCTGGGGGGGGGCGTAGCGGAGAAAGCCCCCTCCCCCAAAAAGCCCGCTTCCAAAATAAGACAACCGGCTTGTCCTGAAACGGAATAGcaaatggcctctctctctcgtgctgccGCACGGAGGCAGGTGGCCGTCTGGCCTGAGTCAGGCAGACCACCGGCCTTCTGTCTGTCGGTGGAGGACATGGGGGGTACCTGTGTATGTTTTAATGagagtatgtttgtgtgtgagtaaTGTGTGTGTTACAGGGCTAATGAGAGCATCATTCTGCCCTaatgacagacaggacacaaaCAGTCCCTTTGCAGCGCCTCTCGGGTTTTGCacataaaacacaacaatctTACTCTGTCCACCTACAGTAGAATGGCATTCCCCTTCCAAACTGGACTGAAACACACGTAGTATTGGGATTGGTAAAAGCATGCAACAACATATCAGCTTGAAGCTGTTTGGGTTAAAGGCTCTACATAAACATTTTCATCATTACAACTCTGGACAAAACCGAAGAAATAAGACACAAATATTTAGATAGGACAACAGAGCAATTTCATTCATATTAAAAATGACTTAAGTCATTCACAAAGCAATCCATGATTGAACTGGTCCTGGAGACATACGAACTATACATGTCATGTGATTCGCTGGCCAAAGACGATTGGTCTGCGTCAGGTTACGTTTAGAGTAGACTCCATAAAATGTACACTTAATGATAATCAACAAAAATAAATCATCAATTCTCAAACAATGTATATAAATAAATAGTAACAGAATTACTGGTAATATGAAAAACCTAAAAGCCTTTTTTTTCTCTGCGTACATTTATGTAGATTTGCCAGTTAGTGCAGTATGTGGACTACTACAATCAATTCTATATTAATGTCATGTGTGTATGAACAAAATATCATGGAGTCTGGACAACGTTGAGATCAAACACAGTCCGATATCAATGATACGAGTGAATATTGTGAAGAGGACAGACAAATTAAACAGGGTCTCCTTCCTTGAGTCAAAACAGAAGCAAACCTTTTCATGCGTTTTCTATAAGTCGAATAAGTCTTTCATTTACGAATGTAGATCTCATATTTGGGCCCAAACGTGTGGAAAGAGGTGACGGACTACCACCTCTTATTTGAAGGTACTGTCCTTTGTacctggaggctgtgtgtgtgtgtgactgtggacGCATGTAGTAAGCCCCCATGTTAATCAGAGTTGAGTCTAGCGTCTAATACACTAGATGGATTGAAAGTTGgtctgacagagagggagaggaaagccCTGCGTACAGATagacaagcactcacacacacagaaaagggACTGCGGACACCTTAGGTTAGACCATGGAAGTAGTGAATACACAACACTAGCAGGATTTACATCTAAACTCTTTGAATTCCCCATaggctctctctctacccagggGAAAGATGGATCTCCCAATCAAACACAGTCCGGTGACAACACCATGAATAATATCAAAAACAAAAGAACAaaaactgtggagagagagagagagagagagacccctgtCATGGCCTGGAAAGTGATTCATTGGAACCATTTGTCCTAATTACTCCAGAGCAATGCTTTTGTCGCTATTAATCacgcctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagagagagagaattagggaGATCAGTGCCCTCGCACATTGAAATAGATAGCCAGGatgatggtgatgaggatgatggcGCCGAGGACGAAGACCAGGACTCTGTTCTGGATGat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1540043 lncRNA downstream 29152 16888502 ~ 16895370 (-) False G1347109
TU1540053 lncRNA downstream 29152 16888502 ~ 16895370 (-) False G1347109
TU1540054 lncRNA downstream 29152 16888502 ~ 16895370 (-) False G1347109
TU1540055 lncRNA downstream 29152 16888502 ~ 16895370 (-) False G1347109
TU1540057 lncRNA downstream 29152 16888502 ~ 16895370 (-) False G1347109
TU1540099 lncRNA upstream 19594 16949026 ~ 16949346 (-) True G1347148
TU1540134 lncRNA upstream 60540 16989972 ~ 17046500 (-) True G1347183
TU1540196 lncRNA upstream 136318 17065750 ~ 17066887 (-) True G1347244
TU1540226 lncRNA upstream 170066 17099498 ~ 17100720 (-) True G1347269
TU1540321 lncRNA upstream 228919 17158351 ~ 17160097 (-) False LOC110491465
XM_021564924.2 mRNA downstream 191418 16728503 ~ 16733104 (-) True LOC110491457
XM_021564925.2 mRNA downstream 191517 16728503 ~ 16733005 (-) False LOC110491457
XM_021564926.2 mRNA downstream 199543 16695214 ~ 16724979 (-) False LOC110491459
XM_036946309.1 mRNA downstream 199543 16695214 ~ 16724979 (-) True LOC110491459
XM_021564922.2 mRNA downstream 242958 16653966 ~ 16681564 (-) True lmf1
XM_036946348.1 mRNA upstream 228882 17158314 ~ 17173932 (-) False LOC110491465
XM_036946345.1 mRNA upstream 228882 17158314 ~ 17173934 (-) False LOC110491465
XM_036946346.1 mRNA upstream 228882 17158314 ~ 17173934 (-) False LOC110491465
XM_036946347.1 mRNA upstream 228882 17158314 ~ 17173934 (-) False LOC110491465
XM_036946352.1 mRNA upstream 376626 17306058 ~ 17352385 (-) False LOC110491470
TU1538336 other downstream 1225259 15698985 ~ 15699263 (-) True G1345561
TU1537992 other downstream 1670952 15251377 ~ 15253570 (-) True G1345259
TU1536004 other downstream 3290344 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 3303782 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 3672854 13251434 ~ 13251668 (-) True G1343278
TU1540318 other upstream 265898 17195330 ~ 17196129 (-) True G1347343
TU1540612 other upstream 459953 17389385 ~ 17391954 (-) True LOC110491477
TU1541907 other upstream 1488183 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1704599 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 2391438 19320870 ~ 19325054 (-) True LOC110491541

Expression Profile