RNA id: TU1540099


Basic Information

Item Value
RNA id TU1540099
length 321
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1347148
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 16949026 ~ 16949346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtgaagcatggaggtggaaacatcattctttggggatgcttttctgcaaaggggacaggacgactgcaccgtattgaggggaggatggatagggccatgtatcgcgagatcttggccaacaacctccttctctcagtaagagcattgaagattggtcgtggctgggtcttccagcatgacaacgacccgaaacacacagccagggcaactaaggagtggctccgtaagaagcatctcaagttcatggagtggcctagccagtctccagacctgaacccaatagaaaatctttggagggagctgaaagtccatattgccca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1539988 lncRNA downstream 22613 16924522 ~ 16926413 (-) False G1347067
TU1539989 lncRNA downstream 22613 16924522 ~ 16926413 (-) False G1347067
TU1539996 lncRNA downstream 22613 16924522 ~ 16926413 (-) False G1347067
TU1539997 lncRNA downstream 22613 16924522 ~ 16926413 (-) False G1347067
TU1539998 lncRNA downstream 22613 16924522 ~ 16926413 (-) False G1347067
TU1540134 lncRNA upstream 40626 16989972 ~ 17046500 (-) True G1347183
TU1540196 lncRNA upstream 116404 17065750 ~ 17066887 (-) True G1347244
TU1540226 lncRNA upstream 150152 17099498 ~ 17100720 (-) True G1347269
TU1540321 lncRNA upstream 209005 17158351 ~ 17160097 (-) False LOC110491465
TU1540323 lncRNA upstream 210843 17160189 ~ 17160397 (-) True G1347348
XM_021564924.2 mRNA downstream 215922 16728503 ~ 16733104 (-) True LOC110491457
XM_021564925.2 mRNA downstream 216021 16728503 ~ 16733005 (-) False LOC110491457
XM_021564926.2 mRNA downstream 224047 16695214 ~ 16724979 (-) False LOC110491459
XM_036946309.1 mRNA downstream 224047 16695214 ~ 16724979 (-) True LOC110491459
XM_021564922.2 mRNA downstream 267462 16653966 ~ 16681564 (-) True lmf1
XM_036946348.1 mRNA upstream 208968 17158314 ~ 17173932 (-) False LOC110491465
XM_036946345.1 mRNA upstream 208968 17158314 ~ 17173934 (-) False LOC110491465
XM_036946346.1 mRNA upstream 208968 17158314 ~ 17173934 (-) False LOC110491465
XM_036946347.1 mRNA upstream 208968 17158314 ~ 17173934 (-) False LOC110491465
XM_036946352.1 mRNA upstream 356712 17306058 ~ 17352385 (-) False LOC110491470
TU1539993 other downstream 19594 16924522 ~ 16929432 (-) False G1347067
TU1539994 other downstream 19594 16924522 ~ 16929432 (-) False G1347067
TU1539999 other downstream 19594 16924522 ~ 16929432 (-) False G1347067
TU1540000 other downstream 19594 16924522 ~ 16929432 (-) True G1347067
TU1538336 other downstream 1249763 15698985 ~ 15699263 (-) True G1345561
TU1540318 other upstream 245984 17195330 ~ 17196129 (-) True G1347343
TU1540612 other upstream 440039 17389385 ~ 17391954 (-) True LOC110491477
TU1541907 other upstream 1468269 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1684685 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 2371524 19320870 ~ 19325054 (-) True LOC110491541

Expression Profile