RNA id: TU1540318



Basic Information


Item Value
RNA id TU1540318
length 672
RNA type TUCP
GC content 0.53
exon number 2
gene id G1347343
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17195330 ~ 17196129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTAAgcatgttgtttttgttttttttatgcattTACCGCCCACATATTGGAGGCCTATTCACTTGAATTGACGGGCATGTTACCGCCTAAATGGGCAGAACGTTGTATAAAAAGTTGAATGGCACTTTACGGTCAAAATCCAAAGTTACATATGTCAAGTTAATATTCAAAGACGCCATGTCGCTCGCTACCTTTGGTTCGGGGCAGCAGGACCATTCTGTGGGGGAGGTCTTGCAGCATGTCTGCAGTTTGGGACAGCTGTACTCTCCAGCACCGTCACACTTCACATCTATCCCCGTCTCCACTGCTCTCTGCTGGGACTCTGCCACCTTTGTCTGGGGAATCGTATGGGGGAGAACACCCTCTACCGGTTTCTCACAGGTCCCAGTCTGCATGTTGCAGCTGTAGCCCTGTGGGCAGCAGTGCTCGTGGTCTGTACAGCAAACAGCCTTGACCAGAGGACAGCAGCCCCATTCTTCTGTGGGCAGCTTGCAGCAGGTGGTCCCAGAGGCACAGCTGCTCTTGTTGTCACACTTGACGTCTTTCAACATGGCTCCCACAGTCAGGGCCTTCTCCTTGCGGTACCAGGGGATGGTCAGGCCCTTAGTGCAGCAGGTCTTTTGGTCGTCACAGCTGTAGCCGCTGGGGCAGCAGTGGTCTCCGTCGGCAC

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1540334 lncRNA downstream 603 17186890 ~ 17194727 (-) True G1347357
TU1540323 lncRNA downstream 34933 17160189 ~ 17160397 (-) True G1347348
TU1540321 lncRNA downstream 35233 17158351 ~ 17160097 (-) False LOC110491465
TU1540226 lncRNA downstream 94610 17099498 ~ 17100720 (-) True G1347269
TU1540196 lncRNA downstream 128443 17065750 ~ 17066887 (-) True G1347244
TU1540320 lncRNA upstream 11016 17207145 ~ 17230708 (-) True G1347345
TU1540561 lncRNA upstream 91866 17287995 ~ 17293635 (-) True G1347556
TU1540613 lncRNA upstream 192970 17389099 ~ 17390656 (-) False LOC110491477
TU1540609 lncRNA upstream 193256 17389385 ~ 17391161 (-) False LOC110491477
TU1540622 lncRNA upstream 209416 17405545 ~ 17407873 (-) True G1347609
XM_036946345.1 mRNA downstream 21396 17158314 ~ 17173934 (-) False LOC110491465
XM_036946346.1 mRNA downstream 21396 17158314 ~ 17173934 (-) False LOC110491465
XM_036946347.1 mRNA downstream 21396 17158314 ~ 17173934 (-) False LOC110491465
XM_036946348.1 mRNA downstream 21398 17158314 ~ 17173932 (-) False LOC110491465
XM_021564924.2 mRNA downstream 462226 16728503 ~ 16733104 (-) True LOC110491457
XM_036946352.1 mRNA upstream 109929 17306058 ~ 17352385 (-) False LOC110491470
XM_036946353.1 mRNA upstream 110468 17306597 ~ 17352385 (-) False LOC110491470
XM_036946354.1 mRNA upstream 110468 17306597 ~ 17352385 (-) False LOC110491470
XM_036946358.1 mRNA upstream 110468 17306597 ~ 17352385 (-) False LOC110491470
XM_036946356.1 mRNA upstream 110616 17306745 ~ 17352385 (-) False LOC110491470
TU1539993 other downstream 265898 16924522 ~ 16929432 (-) False G1347067
TU1539994 other downstream 265898 16924522 ~ 16929432 (-) False G1347067
TU1539999 other downstream 265898 16924522 ~ 16929432 (-) False G1347067
TU1540000 other downstream 265898 16924522 ~ 16929432 (-) True G1347067
TU1538336 other downstream 1496067 15698985 ~ 15699263 (-) True G1345561
TU1540612 other upstream 193256 17389385 ~ 17391954 (-) True LOC110491477
TU1541907 other upstream 1221486 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1437902 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 2124741 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 2264912 19461041 ~ 19461815 (-) True G1349896

Expression Profile