RNA id: TU1540622


Basic Information

Item Value
RNA id TU1540622
length 1466
lncRNA type antisense_over
GC content 0.41
exon number 5
gene id G1347609
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17405545 ~ 17407873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCattatatatatatgcatgcattcggaaagtattcagaccccttgactttttccacattttttgcaaacatttctaaaaacatgttttttagctttgtaacgtaacaaaatgtgaaaaaatgtaaggggtctgaatagtttccgaatgcactgtatgtcctaGCCAAGAGTAGTTAATGTACCATAATGTACACAGATAATACTATATTTCCATCCTAATTTAGAAGTAGTGATGGTAATGATATTGAACATTTAAGTGATAATAAACATCATGCTTACTTCAGGCCTGGGTCCTCAATTTTTATGGGTATGACAACAGTATACAATTTCTCTGAACGTGATTTGACCGAGGTCATATTAGATATCTTGATTCTGCCCATCACCGTTTCATCGATCAGGACTTGCATATCAAAGTCCAAGACTTCCATCTCCGCAAAATTGTCATTGGTGAAGTTGAAAACATTGGTGACTTGCATTTCAACTTTGTCTGGGGTGAAGAAGACCAGTACTGATTGGACGGTGACAGGGGATAGTGAGATACTCCgtgggaagaggaagaagaggatcaGAAAGCAGATCAGGAGACACAGCACCACCGAGATACACACGTAGAGTTTCgtgCGGCTGGGCCTCAGTCTTTTGTCTGAACATGAGATGACTGCCACTAGCTGATCATGTTTTCTTGGAATACGCCCTATTCCCCGACAAGTCGGGCAGTTATCTCCTACATTGCCTATGCTGTCCCCGATGGCTCCGTATAGTTGGGAGTGGGACCGAAATCTTCTCTTCTCTGGATCTTGTTCCTGAGGCACGATGGCCTCTGTGCCCTCCTTGGAGGCACTGGGGTGTCCGACAGTGACCATGGTCTGAAACACCGTCCTATCTGCTGGGAGAAAAGGAAACACAACCCCGTCTGCTGTTAAAAAGGGGGCATCAGCCATGCATTCTCTCACATGAACAAGTAGGACTGATATTGTCTAAAGCTATATTGCTCTTTCTATAAAGCACCTTGGTGTTGGACCTCTTTGTGAAACCTGAAAGAATATTGATTTGCTCTTTATAGTGCAACACTATAAACCTTCAACCGGCCTCTATAAAATAATGTCCCTGCATTTGATACACACGAGGAGAAAGACATAGGAGGAGGCTAAAGTCCTCAACATTGCTCTAAAGACAAGACCGTAGCATCACTGTCTCTTATCTCGGACTGATTGCACGTCTATGATTGCCTGCTGCTAGATTAGATAACGCGATACCTTATTTTTAATACGTTCTGTTAGATGAGATGTTTAGATGAATGAGCTTTTTTGCCACAATATCGCTAAGGGTGTAGGCCATTGTAATTGAATGTAACACTTTCTCCTTTATATAGATTTGGAGTACAAACCAGTAATGCCACTTGATAACAGCATTTACGCATTGTATCTCTCATCCATACTTTACATTCCTTACATAAATGTTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1540609 lncRNA downstream 14384 17389385 ~ 17391161 (-) False LOC110491477
TU1540613 lncRNA downstream 14889 17389099 ~ 17390656 (-) False LOC110491477
TU1540561 lncRNA downstream 111910 17287995 ~ 17293635 (-) True G1347556
TU1540320 lncRNA downstream 174837 17207145 ~ 17230708 (-) True G1347345
TU1540316 lncRNA downstream 193433 17162778 ~ 17212112 (-) True LOC110491465
TU1540810 lncRNA upstream 144184 17552057 ~ 17569945 (-) True LOC110491488
TU1540825 lncRNA upstream 167681 17575554 ~ 17575791 (-) True G1347807
TU1540870 lncRNA upstream 188293 17596166 ~ 17607260 (-) True G1347851
TU1540899 lncRNA upstream 222759 17630632 ~ 17630937 (-) True G1347877
TU1541069 lncRNA upstream 231738 17639611 ~ 17659833 (-) True G1348028
XR_005036456.1 mRNA downstream 11280 17389375 ~ 17394265 (-) False LOC110491477
XM_036946364.1 mRNA downstream 11850 17389375 ~ 17393695 (-) False LOC110491477
XM_021564950.2 mRNA downstream 24835 17376457 ~ 17380710 (-) True LOC110491474
XM_021564948.2 mRNA downstream 45915 17356395 ~ 17359630 (-) True LOC110491471
XM_036946355.1 mRNA downstream 53160 17306750 ~ 17352385 (-) False LOC110491470
XR_002468843.2 mRNA upstream 140332 17548205 ~ 17569882 (-) False LOC110491488
LOC110492844 mRNA upstream 263613 17671486 ~ 17682483 (-) True LOC110492844
XM_021564962.2 mRNA upstream 276598 17684471 ~ 17694082 (-) True LOC110491480
XM_036946367.1 mRNA upstream 306007 17713880 ~ 17743000 (-) False LOC110491482
XM_021564964.2 mRNA upstream 306007 17713880 ~ 17868844 (-) False LOC110491482
TU1540612 other downstream 13591 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 209416 17195330 ~ 17196129 (-) True G1347343
TU1539993 other downstream 476113 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 1009742 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1226158 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1912997 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 2053168 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 2283819 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile