RNA id: TU1541733


Basic Information

Item Value
RNA id TU1541733
length 3304
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1348630
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18092488 ~ 18095817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAACAATCAGTGCATTTTATTTTCCATCACAGTACAAAAATAAATTAAAGTAAGCAGAAACAAACTGAGAAAGGTTCAATTGGAGCAAtgtcttttttttgtctttttcaaAATAACAGCTCCCCCCCTACAATCACATCCCAGCCCCAGTAGTCTATCAGTGATCACATCTCAGTCCCAGTAGTCTATCAGTGATCACATCCCAGTCCCAGTAGTCTATCAGTGATCACATCCCAGTCCCAGTAGTCTATCAGTGATCACATCCCAGCCCCAGTAGTCTATCAGTGATCACATCCAGTCCCAGTAGTCTATCAGTGATCACATCCCAGTCCCAGTAGTCTATCAGTGATCACATCCCAGTCCCAGTAGTCTATCAGTGATCACATCCCAGTCCCAGTAGTCTATCAGTGATCACATCCTGTCCCAGTAGTCTATCAGTGTAGAGCATCCTCTTTTCCACTTCCTCTTTGTCATAAGAAAACAAAATTCACACATTCTTCTGTACAGATAAACTCTCACACACTTGCGCTCACATGCATCATTGAAATGCCCCCTTTTCATGTTCTTTAACACCCTTTTTTTGTTCTACAAAGTACGCAACAAGATACTGAAATCGAAGTCGACTGAAATGTTCAAACATAtcactttttttctcttttttttgtaAGATTTTTCCAAGTCTTTCAAACAACTAGTCAGTGATGCAAGTGGCAAAAAAATGGCACATTTTAGTGAGTTGGGGCAAGTGAACAGCGAGAGGGTCAAGATTCCCCTGCTTTTGACCCCTTACCCCAATGCCCTGCTTTTTCCCCAGAGCAGTAGCCCATCCAAAGTGTGTGTCCCTCCTACTGCGCTACACACAACAACCCATTTCCCATTACAAGGCACAATGCCACGGTACCGCTCCACAACCATGTCCATTTGCACCATACATTTTTCTCTTTGACTCCCACTGatacagcagaggagagagatcTATCATATGTCAACCAACAGTCCCCAAGAACAACCTTCATCACATGACATGGGCATGGAAAAGACATACAAATGAAAATGGTATTTATTCGCTGCATATGACTATAAACATTTTGCATTTCTAGAAAGAAATTTGAGAATCAACTAATGAAAGAAAGCATGCGGAATTTCTCACTGTTGAGGTGATAAAAAGCTGGCAAATACTACTTTTTATTCGCTTGTTTTTATGTGCATTATTttcatttgttgtttttttcccccaaggTCCAGTTAAGTctctgtactgtatactatagAAAACATATTCCTGTTAATCTGTGGATTCAATTCGACATATCTCTTACAACATTAAACAGTGGTTGACAGAAAAATCTACCACCTCCCTTTATCTCAGTTATTGGAGATGGCGATGCTATCAGTTCTATAATCTTTTTTAGCCTCTACAATTCTTCAATGCAAATGATTGCCATGTATCTTGACTGCTCCGTAAGCTCTCATGTAGATGTAGTCCAGGTTGCCATGGTGTTCCTATTTCCCTCTATGCTCTTCCATTTATCCTAGTGGCTTCAGCTGATTTGAAAACCTGATTATCTCCATGGAGGTCAACTAGAATCTAACCTGACCATGGCCTCATCTCCTCCCCAGCTGAATACATTGTTGTCTTAGATTTGATTAATATTGGCATGGAGAGATTACGCCAGGGGAGGCTGTCTGTAAATGTTTATGCTGTGCCACTGAGTGGTTTTGAGTGAAATGCTCTGCCATTGGCTGATGGTTATGTTGTCTTGTTGATATGTGGAGCTGGGTGGTGTGTTGGGTTTGGGATTGCTCTGTGCCTAGGGTTCTAAGGGTTCTAGGGGTGCTAAAGGTTCTAAGGGGTTTTGTCTTTACTCAAGGTCTCTCTGATGTGTTGGTTACTTTGTCGATGGTCAGATTTTTACTGGTTGTTAATCTAGGGCTAATCTATAGCTTATTCCATGGAACATTCATTTGCAACAACCATCAATCTTCATTCCCACCATATCCTGTAATTTGAAATAGACCAATTGATCATTCATTCATGATCTTTTGATTACAAGGGATGTGCCAAGAGAACATAAAATTACAATAAATTAAGTTCACTCAACATTTGGACATCTTTCGCTGTGTTTTCAGACCTACAGGATTTTCATCAAAGATATGGCACTAGTTAAACATTTGTTAATGCTGAATTTCTTATAGCACAATATGGACCTTCATTCCCAAGTGTTTTTAGACACAACCATCAGACAAAAGTACAAAAGAATTCCTTGGTAAACAAATAGCCTATTTAAGCAAGCATAGCTAAATAAACTAGTTATCACTTTGTTCACAGCATTCTCTAATGCAGATGCAGTTAAGTCATTCCTGCCCTCCAAAATTGCATGGCACACGTGCATTAGGCTATTATTTTGaagttaaaaaaagaaaaagggcAATAGACAAGCCTCCCTGGGCTTGAGCCTTTGAACATCCATTAATTTTTTTCTGAGATGAAAATAAAGTAGGCCTTTCTTAACATGTAGTGTGACCGACCATCAAGTGTTGTGTCTTTAGGTTGTACTGTAATTCCTAATgtcctgttgtgttgtggtcaAAAAAAAAATCCCACAATGCAATGCAGGCTTTTTTTCAAATCCTTCTGAACCAATCTTTCTCCACCAAACCCCTCTCGCCAAGTCACAAACAATAAACGCAATACATGAATCTGCATCGGTGGCCCCACTTTTCCTTTCAGGTCAAATCATGTTTACGCTGCAGCAGAGCTGGGTGTTCACTTCAGAGTCTAAAGAACCAGGGTTGCAGCTTGTCTGTTCATCCATGATGTGAGTAGTAGCCCAGTCACACAATAGGCAGTGCATCTCAGACAGTCagcaggtggctggtctcaatcCTCTACACATTCATAGCTGCACATTTGTGTTCTTTttctactgtttttttttttattgtgtattATTGTTGGTTTTGTATTTTTCAATGTTTTTATATACATGTTTGTAAACAGAGGATGTACCCAAGTCTGGCATTTTTTTAGGTGTCAAAAGCTTTCATTCTTAGGTGCAGTGGAAATACGATCCTCTTTCCTTTCGAAAAACATTAGTTGGTTTTAAGATAAATTGAGATAAATAATATTTTTACcataaaatgtcatttgtttttaaTCAAACTGTGTTCTCATGTCCCTCTTCCAGTGAACTGTTGTAATGTTAGCTGTTAAACATGCTTATAATCAAAAACTTTTGGGGTATATCTATGCCAAATTAACCCTTATATCAACCCTCAAAATTAATCTCTTCCCATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541730 lncRNA downstream 13438 18078544 ~ 18079050 (-) True G1348629
TU1541728 lncRNA downstream 17088 18075153 ~ 18075400 (-) True G1348627
TU1541727 lncRNA downstream 17869 18074368 ~ 18074619 (-) True G1348626
TU1541676 lncRNA downstream 112232 17974581 ~ 17980256 (-) True G1348575
TU1541236 lncRNA downstream 181282 17910910 ~ 17911206 (-) True G1348182
TU1541743 lncRNA upstream 1066 18096883 ~ 18097176 (-) True G1348631
TU1541787 lncRNA upstream 67542 18163359 ~ 18164362 (-) True G1348669
TU1541807 lncRNA upstream 102984 18198801 ~ 18199108 (-) True G1348689
TU1541914 lncRNA upstream 238511 18334328 ~ 18334543 (-) True G1348784
TU1541931 lncRNA upstream 283716 18379533 ~ 18380412 (-) True G1348800
XM_021564977.2 mRNA downstream 4153 18080272 ~ 18088335 (-) True LOC110491492
XM_036946370.1 mRNA downstream 19099 18026514 ~ 18073389 (-) True LOC110491491
XM_036946369.1 mRNA downstream 19100 18026514 ~ 18073388 (-) False LOC110491491
XM_021564971.2 mRNA downstream 108595 17981389 ~ 17983893 (-) False ormdl3
XM_021564972.2 mRNA downstream 108595 17981389 ~ 17983893 (-) True ormdl3
XM_036946371.1 mRNA upstream 3142 18098959 ~ 18222910 (-) False myo1d
XR_005036457.1 mRNA upstream 6433 18102250 ~ 18222915 (-) True myo1d
XM_021564980.2 mRNA upstream 127667 18223484 ~ 18226919 (-) True LOC110491495
XM_021564981.2 mRNA upstream 135709 18231526 ~ 18242108 (-) False pdk2a
XM_036946372.1 mRNA upstream 135709 18231526 ~ 18242110 (-) True pdk2a
TU1540612 other downstream 700534 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 896359 17195330 ~ 17196129 (-) True G1347343
TU1539994 other downstream 1163056 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 321798 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 538214 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1225053 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1365224 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1595875 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile