RNA id: TU1541931



Basic Information


Item Value
RNA id TU1541931
length 880
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G1348800
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18379533 ~ 18380412 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTTCGTTATGATCATTTCGGTTTGGTATTTGTGGAACTTCGCCCACAGAGGATAGTTGTTGAGGAGAGCCTGCGTCTTTCCGCACACCTGTAGCCCAGGTAATGGGTAGAGTGGCGCGCGATAGTACCCATGTTGAACGGGTGCGGGATAACTCTCCGCAGAGGCAGGGTAAACTTCTTTGCTAGTTGTCGAGAAACCTTCGCTTCCCGTTGGTAAATAAGTCTGTCCCGTTCCGTTTCTAGTCGGCGACCTGACACTGCTGAAATGGCAGCTATTGTGGGGAGTTGGTGAGTAAAACCTCCCGGGTTGCGCTCCGAATCCGGCCACAGTTTGGTCTGCGTGGTACGGCAGTGCCGATCCGTCCTGTCCGTTTTGAATTGAGTCTTGGTAATATAATCTGGTGTCCTGAATTCCCATTTTAAAATCCACGGAATTCTTGCTGCGTTGAAGGTGATTGTTGATATCGGTGTCTTTTCCGAAAGTTTGCGTATCTGTCCCATTCAACATACTGAGGTAAAGATTGCCACCTATGCCGCCCATTtgcagccccagtctcagtgtatGTGCAATGTCATAGGTTCACGGTGCCCCTGTTTCACGTCCAGTGAATTGAAAGCGCGTTTACGGATTTTGAGATAAATGCACAAACTGAAACATTTCGTCCACCTACCGATGTTTTTTTCCTCACTCGAGCTAAGTACAATTGACTAAAGTTCCTATACCAATAAATCTATCGACTTCTGGAAAACGCACCTTACATTTAAATATTCCAACAAATTGGCAATCATTTAAAATAGCCTACTATTTATTAAAATAAACTGGCTAATTATTTTATCTTTGGTCTTCGATTGTCTTATCTTCTTTTTACAAGAGTCCCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1541914 lncRNA downstream 44990 18334328 ~ 18334543 (-) True G1348784
TU1541807 lncRNA downstream 180425 18198801 ~ 18199108 (-) True G1348689
TU1541787 lncRNA downstream 215171 18163359 ~ 18164362 (-) True G1348669
TU1541743 lncRNA downstream 282357 18096883 ~ 18097176 (-) True G1348631
TU1541735 lncRNA downstream 283716 18092488 ~ 18095817 (-) False G1348630
TU1541935 lncRNA upstream 9834 18390246 ~ 18390523 (-) True G1348804
TU1541908 lncRNA upstream 10359 18390771 ~ 18392168 (-) True G1348778
TU1541994 lncRNA upstream 134066 18514478 ~ 18514714 (-) True G1348858
TU1542009 lncRNA upstream 143767 18524179 ~ 18524379 (-) True hoxb1b
TU1542506 lncRNA upstream 147763 18528175 ~ 18528409 (-) False LOC110491505
XM_036946372.1 mRNA downstream 137423 18231526 ~ 18242110 (-) True pdk2a
XM_021564981.2 mRNA downstream 137425 18231526 ~ 18242108 (-) False pdk2a
XM_021564980.2 mRNA downstream 152614 18223484 ~ 18226919 (-) True LOC110491495
XR_005036457.1 mRNA downstream 156618 18102250 ~ 18222915 (-) True myo1d
XM_036946371.1 mRNA downstream 156623 18098959 ~ 18222910 (-) False myo1d
NM_001124580.1 mRNA upstream 16065 18396477 ~ 18405643 (-) False LOC100136345
XM_021564384.2 mRNA upstream 16065 18396477 ~ 18409233 (-) False LOC100136345
XM_021564383.2 mRNA upstream 16065 18396477 ~ 18409234 (-) False LOC100136345
XM_021564385.2 mRNA upstream 16065 18396477 ~ 18409234 (-) False LOC100136345
XM_021564386.2 mRNA upstream 16065 18396477 ~ 18409234 (-) True LOC100136345
TU1540612 other downstream 987579 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1183404 17195330 ~ 17196129 (-) True G1347343
TU1539994 other downstream 1450101 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 37203 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 253619 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 940458 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1080629 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1311280 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile