RNA id: TU1541908


Basic Information

Item Value
RNA id TU1541908
length 1398
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1348778
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18390771 ~ 18392168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagggggagagagggggcgagagagagagatcactgaCTGCATGAAATTACTAATGAGGGTTACACAGTTTATTTTCTTATCGTGGGAAAGTCTTCTTGTTTGGCACTTCAGTGTGAGTACACTTCTGTTCCTAATTACGTTATAAACGTCTatggcagtggtcaccaaccttttctgagtcaagatcactttctgagtcaaaatgcatgcCGAGATCTACCACTCTGATTTTTTGTTaacatgactttaaaaaaaattaagcctatgcaacattaaccaattaaagacagtactgtaccAGTGAGGTATGTGCAGCAAgcaataggcccaatacattatccccGCAtactggctttgcttgaattgacCTGCCAATGAATTGTTGTTCGGgacatgtaaaaatatatatatttcaaaatttgaggtaggctatatgatcacaccggtaatagatccattgttgtattactgggctgatggtgcctgcatctgatggtcagtctcagaggagggagagagcaacatctctcaacatccctccgctctccctttcctccactgacactgaccaaaaagggacaccgtcttccagctgatggcgaaattCGAGTCGCATCACATTgcttctgcctcatgcacaaattcaggttgttactcctatgaacagagaaacgttccttgatattaaaaaagacccaagccgctatagatacactttcctactcattcattactgctgcactgcttgttgtagagctgagtggaaataggaagaacacACATTTTATGGGTGAATAAAGTGTTCAagacaaagtgttgacagtgctgagtaagaacttaaacatgaactcactcataaaacagcagctctttgctgtattcattgacagtctctctctagtcatggttttaaacgttttgaaatcacagtatcaactttttttttatttttttatttttttttacctcacaTAACATGGCAACAGTTTGCCTACCCGGGTGCAGGGCAGCTGAATTGactgcacctaccaccaacaacccgataataattttaaaaaaaataggaacacaaggccttatcgttgtttttttttacagaaatatttggcgatcgactagaaatgccttggagatcgacaaGTCGATcgcgatcgaccggttggtgaccccTGGTCTATGGTATGCTAAGGAAAAGGGCTAGTCAAATGAGCTGTTGAGGTCAGGCGAGGTGACTCACGTCTGCGTTCTGATAGGCTGTGACGGCGATGAATTGGGTCTCTGGGAAGACGAAGGTCTGGGCCTTGGCGGTGAGGAAGAGGTCCTCAGAACCATCCTCCTTCACTTCGACGATGTGCAACCGTGGCTGGTACTTATGAAGTGACTGCAGAACGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541935 lncRNA downstream 248 18390246 ~ 18390523 (-) True G1348804
TU1541931 lncRNA downstream 10359 18379533 ~ 18380412 (-) True G1348800
TU1541914 lncRNA downstream 56228 18334328 ~ 18334543 (-) True G1348784
TU1541807 lncRNA downstream 191663 18198801 ~ 18199108 (-) True G1348689
TU1541787 lncRNA downstream 226409 18163359 ~ 18164362 (-) True G1348669
TU1541994 lncRNA upstream 122310 18514478 ~ 18514714 (-) True G1348858
TU1542009 lncRNA upstream 132011 18524179 ~ 18524379 (-) True hoxb1b
TU1542506 lncRNA upstream 136007 18528175 ~ 18528409 (-) False LOC110491505
TU1542508 lncRNA upstream 137363 18529531 ~ 18529762 (-) True LOC110491505
TU1542517 lncRNA upstream 141386 18533554 ~ 18533859 (-) True G1349314
XM_036946372.1 mRNA downstream 148661 18231526 ~ 18242110 (-) True pdk2a
XM_021564981.2 mRNA downstream 148663 18231526 ~ 18242108 (-) False pdk2a
XM_021564980.2 mRNA downstream 163852 18223484 ~ 18226919 (-) True LOC110491495
XR_005036457.1 mRNA downstream 167856 18102250 ~ 18222915 (-) True myo1d
XM_036946371.1 mRNA downstream 167861 18098959 ~ 18222910 (-) False myo1d
NM_001124580.1 mRNA upstream 4309 18396477 ~ 18405643 (-) False LOC100136345
XM_021564384.2 mRNA upstream 4309 18396477 ~ 18409233 (-) False LOC100136345
XM_021564383.2 mRNA upstream 4309 18396477 ~ 18409234 (-) False LOC100136345
XM_021564385.2 mRNA upstream 4309 18396477 ~ 18409234 (-) False LOC100136345
XM_021564386.2 mRNA upstream 4309 18396477 ~ 18409234 (-) True LOC100136345
TU1540612 other downstream 998817 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1194642 17195330 ~ 17196129 (-) True G1347343
TU1539994 other downstream 1461339 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 25447 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 241863 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 928702 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1068873 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1299524 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile