RNA id: TU1542584



Basic Information


Item Value
RNA id TU1542584
length 343
lncRNA type antisense_over
GC content 0.67
exon number 1
gene id G1349365
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18633507 ~ 18633849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCCATGTTGTAGATGGATGGGTGTCGCCCGGGGAAGGTGAGGAAGGGCTTGTGTTTGGAGCGCGGTGGGCTGGGGtcgtggtgggggtggtggtgaagGCCGTTGCTGCTGCCGCCGTTGAGCTGGCCGGGCCGTGTGACCGTGGCCGGGGAGAGGGACGGCAGGCaggagaaggaggtagacaggGGCTCGGGGTAAGGCGGCTCCAGGCTCCTCTCCTGGCTGCGCTCCAGGCCAGAGACACGTGGGGTGACCGCCAGCCGCGAGAGGCCACAGCGGcctggtagtggtagtagagggCAGCCTTTGCCCATAGAAGAGGCAACGCTCACAGGGATAGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1542519 lncRNA downstream 4825 18627140 ~ 18628682 (-) True G1349316
TU1542571 lncRNA downstream 11743 18620498 ~ 18621764 (-) False G1349353
TU1542572 lncRNA downstream 11743 18621444 ~ 18621764 (-) True G1349353
TU1542511 lncRNA downstream 37898 18594183 ~ 18595609 (-) True G1349308
TU1542567 lncRNA downstream 47725 18585444 ~ 18585782 (-) True G1349349
TU1542586 lncRNA upstream 627 18634476 ~ 18634762 (-) False G1349367
TU1542587 lncRNA upstream 627 18634476 ~ 18634888 (-) True G1349367
TU1542588 lncRNA upstream 1420 18635269 ~ 18635891 (-) True G1349368
TU1542599 lncRNA upstream 21025 18654874 ~ 18655508 (-) True G1349378
TU1542659 lncRNA upstream 111380 18745229 ~ 18782372 (-) True G1349431
NM_001165070.2 mRNA downstream 7067 18622634 ~ 18626440 (-) False chmp2a
XM_036945761.1 mRNA downstream 7790 18622633 ~ 18625717 (-) False chmp2a
XM_036945762.1 mRNA downstream 7864 18623230 ~ 18625643 (-) True chmp2a
XM_036946382.1 mRNA downstream 27333 18604985 ~ 18606174 (-) True LOC118939514
XM_021565018.2 mRNA downstream 30378 18595651 ~ 18603129 (-) True snf8
XM_021565026.2 mRNA upstream 38492 18672341 ~ 18679390 (-) False LOC110491515
XM_021565025.2 mRNA upstream 38497 18672346 ~ 18679346 (-) True LOC110491515
XM_036946395.1 mRNA upstream 123718 18757567 ~ 18764892 (-) False LOC110491517
XM_036946396.1 mRNA upstream 123718 18757567 ~ 18764892 (-) False LOC110491517
XM_036946394.1 mRNA upstream 123719 18757568 ~ 18764892 (-) False LOC110491517
TU1541907 other downstream 210321 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1241553 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1437378 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1704075 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 182 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 687021 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 827192 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1057843 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1696551 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile