RNA id: TU1543013



Basic Information


Item Value
RNA id TU1543013
length 207
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1349732
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19297726 ~ 19297932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggaggaaacctggcaccatccctaccgtgaagcatggtggtggcagcatgtttttcaggggcagggacagggaaactagtcaggatcgagggaaagatgaacggagcaaagtacagagaaatctttgaagaaaacctgctccagagcgctcaggacctcagactggagcgaaggttcacctttcaacaggacaacgaccctaagcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1543007 lncRNA downstream 13578 19283138 ~ 19284148 (-) True G1349728
TU1542999 lncRNA downstream 30626 19266677 ~ 19267100 (-) True G1349721
TU1542998 lncRNA downstream 31290 19266189 ~ 19266436 (-) True G1349720
TU1542996 lncRNA downstream 34131 19263359 ~ 19263595 (-) True G1349718
TU1542921 lncRNA downstream 55183 19241123 ~ 19242543 (-) True G1349645
TU1543042 lncRNA upstream 50679 19348611 ~ 19348908 (-) True G1349758
TU1543104 lncRNA upstream 103432 19401364 ~ 19401620 (-) True G1349820
TU1543158 lncRNA upstream 143009 19440941 ~ 19441203 (-) True G1349871
TU1543166 lncRNA upstream 150355 19448287 ~ 19448554 (-) True G1349879
TU1543171 lncRNA upstream 153308 19451240 ~ 19451546 (-) True G1349884
XM_021567323.2 mRNA downstream 18391 19244110 ~ 19279335 (-) True sema4gb
XM_021565062.2 mRNA downstream 58485 19232951 ~ 19239241 (-) True twnk
XM_021565061.2 mRNA downstream 87319 19164692 ~ 19210407 (-) True LOC110491536
XM_021565059.2 mRNA downstream 87322 19164692 ~ 19210404 (-) False LOC110491536
XM_021565060.2 mRNA downstream 115568 19164692 ~ 19182158 (-) False LOC110491536
XM_021565071.2 mRNA upstream 13038 19310970 ~ 19325094 (-) False LOC110491541
XM_021565076.2 mRNA upstream 42394 19340326 ~ 19342139 (-) True LOC110491543
XR_002468846.2 mRNA upstream 113586 19411518 ~ 19432319 (-) True LOC110491545
XM_021565079.2 mRNA upstream 139263 19437195 ~ 19439759 (-) True LOC110491546
XM_036946428.1 mRNA upstream 257160 19555092 ~ 19581659 (-) False LOC110491548
TU1542585 other downstream 663321 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 874540 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1905772 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 2101597 17195330 ~ 17196129 (-) True G1347343
TU1540000 other downstream 2368294 16924522 ~ 16929432 (-) True G1347067
TU1542973 other upstream 22938 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 163109 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 393760 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1032468 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 1342294 20640226 ~ 20646198 (-) True LOC110491585

Expression Profile