RNA id: TU1544070


Basic Information

Item Value
RNA id TU1544070
length 511
lncRNA type read_through
GC content 0.37
exon number 2
gene id G1350633
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19952226 ~ 20036837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgtgtgaagactatttcttcctaacaaagacagccaacttcgccaaatggGGGAggatttaacaaaagcgcatttgcgaaaaaagcacaatcgttgcacgactgtacctaaccataaacatcaatgcctttcttaaaatcaatacacagaagtatatatttttaaacctgcatatttagctaaaagaaatccaagttagcaggcaatattaaccaggtgaaattgtgtcacttctcttgcgttcattgcacgcagagtcagggtatatgcaacagtttgggccgcctggctcgttgcgaactaattttccAGAAATTtccgtaattatgacataacattgaaggttgtgcaatgtaacaggaatacttagacttatggatgccatccgttagataaaatacagaacggttctgtatttcactgaaagaatgaacgttttgttttcgagatgatagtttccggattttaccatattaatgacctaaggctagtatttctgtgtgttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1543808 lncRNA downstream 308458 19643148 ~ 19643768 (-) True G1350450
TU1543802 lncRNA downstream 318453 19632593 ~ 19633773 (-) True G1350445
TU1543758 lncRNA downstream 398630 19553298 ~ 19553596 (-) True G1350408
TU1543711 lncRNA downstream 435451 19478648 ~ 19516775 (-) True G1350361
TU1543187 lncRNA downstream 488044 19463898 ~ 19464182 (-) True G1349900
TU1544137 lncRNA upstream 19738 20056575 ~ 20056817 (-) True G1350698
TU1544119 lncRNA upstream 53658 20090495 ~ 20113687 (-) True med24
TU1544201 lncRNA upstream 156884 20193721 ~ 20193923 (-) True G1350761
TU1545308 lncRNA upstream 202038 20238875 ~ 20239098 (-) True G1351772
TU1545309 lncRNA upstream 203974 20240811 ~ 20241017 (-) True G1351773
XM_036946443.1 mRNA downstream 12643 19752456 ~ 19939583 (-) False raraa
XM_036946447.1 mRNA downstream 141282 19752456 ~ 19810944 (-) False raraa
XM_021565093.2 mRNA downstream 144944 19752456 ~ 19807282 (-) False raraa
XM_021565097.2 mRNA downstream 144945 19752456 ~ 19807281 (-) False raraa
XM_021565098.2 mRNA downstream 144947 19752456 ~ 19807279 (-) False raraa
XR_005036475.1 mRNA upstream 46921 20083758 ~ 20114941 (-) False med24
XR_005036468.1 mRNA upstream 46921 20083758 ~ 20114948 (-) False med24
XR_005036469.1 mRNA upstream 46921 20083758 ~ 20114948 (-) False med24
XR_005036471.1 mRNA upstream 46921 20083758 ~ 20114948 (-) False med24
XR_005036472.1 mRNA upstream 46921 20083758 ~ 20114948 (-) False med24
TU1543843 other downstream 254568 19691692 ~ 19697658 (-) True LOC110491553
TU1543183 other downstream 490411 19461041 ~ 19461815 (-) True G1349896
TU1542973 other downstream 627172 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 1317821 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 1529040 18417615 ~ 18423186 (-) True prr15lb
TU1545321 other upstream 293563 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 603389 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 783862 20820699 ~ 20823122 (-) False h3f3d
TU1545463 other upstream 783862 20820699 ~ 20823122 (-) True h3f3d
TU1545802 other upstream 1172626 21209463 ~ 21210794 (-) True G1352220

Expression Profile