RNA id: TU1545340



Basic Information


Item Value
RNA id TU1545340
length 431
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G1351804
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20280826 ~ 20281256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGAAAATATACAGCAAACAAATCTGCCTTTAATAGCGATTTAAAAGGAGTGAGTTGgttgtctgtctctcatatcTAACATCCTGTAAGATGTCTGCAGAGCTATGCCTAGTCATCCAGCTGGCACAGACAGGCCACCCCGCGGTTGATCCAATGTTTCTGTGGCCGGTCGGAGGGAAGCTCGATAGGCATTACGTAGTTGGTGGAGTGGCCCGTGGTGGACAGGGTTCCGCGCCGTGCACTGGTCTTGTACACGGGACACACATAGATGTTCTCATGCAGGAACTTTGACATCTCCCCTGGCCTGAGCCAGATGATGGGCAGGGGGTCGAAGAGGATCTTGGGGAGGGACTCTCCTATGACCATCTTCTCCCGGTCCCAGCGTGCCCCTTCCAGGAAGAACCCCTTCACGTAGGCCCCATCATCTGGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1545338 lncRNA downstream 59 20280427 ~ 20280767 (-) True G1351802
TU1545337 lncRNA downstream 460 20280098 ~ 20280366 (-) True G1351801
TU1545334 lncRNA downstream 4071 20276531 ~ 20276755 (-) True G1351798
TU1545333 lncRNA downstream 5042 20275541 ~ 20275784 (-) True G1351797
TU1545330 lncRNA downstream 9767 20270824 ~ 20271059 (-) True G1351794
TU1545358 lncRNA upstream 30169 20311425 ~ 20312434 (-) True G1351816
TU1545375 lncRNA upstream 93996 20375252 ~ 20375533 (-) True G1351830
TU1545378 lncRNA upstream 96300 20377556 ~ 20386225 (-) True G1351832
TU1545391 lncRNA upstream 113326 20394582 ~ 20402250 (-) False G1351844
TU1545392 lncRNA upstream 118272 20399528 ~ 20402250 (-) True G1351844
XM_021565106.2 mRNA downstream 113184 20153681 ~ 20167642 (-) True kcnj12a
XR_005036470.1 mRNA downstream 156292 20083758 ~ 20124534 (-) False med24
XR_005036466.1 mRNA downstream 156295 20083758 ~ 20124531 (-) False med24
XR_005036465.1 mRNA downstream 156296 20083758 ~ 20124530 (-) False med24
LOC110491568 mRNA upstream 4553 20285809 ~ 20286964 (-) True LOC110491568
XM_021565116.1 mRNA upstream 49149 20330405 ~ 20334029 (-) False LOC110491567
XM_021565119.2 mRNA upstream 57853 20339109 ~ 20346615 (-) False fam234a
XM_021565120.2 mRNA upstream 57853 20339109 ~ 20346645 (-) False fam234a
XM_036946457.1 mRNA upstream 57853 20339109 ~ 20347491 (-) True fam234a
TU1543843 other downstream 583168 19691692 ~ 19697658 (-) True LOC110491553
TU1543183 other downstream 819011 19461041 ~ 19461815 (-) True G1349896
TU1542973 other downstream 955772 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 1646421 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 1857640 18417615 ~ 18423186 (-) True prr15lb
TU1545321 other upstream 49144 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 358970 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 539443 20820699 ~ 20823122 (-) False h3f3d
TU1545463 other upstream 539443 20820699 ~ 20823122 (-) True h3f3d
TU1545802 other upstream 928207 21209463 ~ 21210794 (-) True G1352220

Expression Profile