RNA id: TU1546314


Basic Information

Item Value
RNA id TU1546314
length 230
lncRNA type inter_gene
GC content 0.62
exon number 2
gene id G1352688
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22046906 ~ 22047429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttccggactgtggaccgtcgcaggaggttccgaaCTGTGGACCGTcaccagaagctctggactggggaccgtcgccggaagctctggactgtgaaccatcgccggaagctctggactgtgaatgtgcactggaggcctagtgcgttgagccggcacaggtggtaccggactggtgacacacgcttcagggcaagtgcgaggaggaggcacaggacgtacaggactgagg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1546302 lncRNA upstream 8757 22037709 ~ 22038149 (+) True G1352680
TU1546292 lncRNA upstream 13974 22032717 ~ 22032932 (+) True G1352676
TU1546275 lncRNA upstream 28533 22018042 ~ 22018373 (+) True G1352659
TU1545078 lncRNA upstream 45794 22000311 ~ 22001112 (+) True LOC110491629
TU1545129 lncRNA upstream 259487 21783150 ~ 21787419 (+) False G1351595
TU1546317 lncRNA downstream 1977 22049406 ~ 22049686 (+) True G1352691
TU1546339 lncRNA downstream 25053 22072482 ~ 22072798 (+) True G1352713
TU1546349 lncRNA downstream 95932 22143361 ~ 22144262 (+) True ntn2
TU1546428 lncRNA downstream 105171 22152600 ~ 22152827 (+) True G1352795
TU1546434 lncRNA downstream 116560 22163989 ~ 22164338 (+) True G1352801
XM_021565214.2 mRNA upstream 9663 22034623 ~ 22037243 (+) True nog2
XM_036946493.1 mRNA upstream 45737 21752363 ~ 22001169 (+) False LOC110491629
XM_036946498.1 mRNA downstream 33679 22081108 ~ 22144284 (+) False ntn2
XM_036946500.1 mRNA downstream 37901 22085330 ~ 22144284 (+) False ntn2
XM_036946497.1 mRNA downstream 37902 22085331 ~ 22144284 (+) False ntn2
XM_036946499.1 mRNA downstream 37902 22085331 ~ 22144284 (+) False ntn2
NM_001160640.2 mRNA downstream 269940 22317369 ~ 22329149 (+) True atp6v0cb
TU1545079 other upstream 46655 21999357 ~ 22000251 (+) False LOC110491629
TU1545030 other upstream 366025 21679224 ~ 21680881 (+) True G1351501
TU1544874 other upstream 641789 21402227 ~ 21405117 (+) True G1351366
TU1544755 other upstream 825759 21220765 ~ 21221147 (+) True G1351274
TU1543613 other upstream 2008928 20030730 ~ 20037978 (+) True G1350275
TU1546739 other downstream 584450 22631879 ~ 22632305 (+) True G1353021
TU1547300 other downstream 997840 23045269 ~ 23045884 (+) True G1353519
TU1547339 other downstream 1076430 23123859 ~ 23126311 (+) False LOC110491658
TU1547458 other downstream 1251028 23298457 ~ 23298753 (+) True G1353660
TU1547936 other downstream 1432660 23480089 ~ 23488612 (+) True LOC110491671

Expression Profile