RNA id: TU1546317


Basic Information

Item Value
RNA id TU1546317
length 281
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1352691
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22049406 ~ 22049686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcctgccatatcagttctgttatactcacagacattattttaacagttttcgaaactttagagtgttttctatccagatctactaattatatgcatatcctgtcttctgggcctgagtagtaggcagtttaatttggacaagcttttcatccaaaattccgaatgctgccccctaccatAGTGAAGATAAATATGATCCCcaaacgattaccagctgcctctaattgggaatcatacaaaacaccaacatagaaaaataaactagaacacaacatagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1546314 lncRNA upstream 1977 22046906 ~ 22047429 (+) True G1352688
TU1546302 lncRNA upstream 11257 22037709 ~ 22038149 (+) True G1352680
TU1546292 lncRNA upstream 16474 22032717 ~ 22032932 (+) True G1352676
TU1546275 lncRNA upstream 31033 22018042 ~ 22018373 (+) True G1352659
TU1545078 lncRNA upstream 48294 22000311 ~ 22001112 (+) True LOC110491629
TU1546339 lncRNA downstream 22796 22072482 ~ 22072798 (+) True G1352713
TU1546349 lncRNA downstream 93675 22143361 ~ 22144262 (+) True ntn2
TU1546428 lncRNA downstream 102914 22152600 ~ 22152827 (+) True G1352795
TU1546434 lncRNA downstream 114303 22163989 ~ 22164338 (+) True G1352801
TU1546440 lncRNA downstream 133745 22183431 ~ 22183769 (+) True G1352807
XM_021565214.2 mRNA upstream 12163 22034623 ~ 22037243 (+) True nog2
XM_036946493.1 mRNA upstream 48237 21752363 ~ 22001169 (+) False LOC110491629
XM_036946498.1 mRNA downstream 31422 22081108 ~ 22144284 (+) False ntn2
XM_036946500.1 mRNA downstream 35644 22085330 ~ 22144284 (+) False ntn2
XM_036946497.1 mRNA downstream 35645 22085331 ~ 22144284 (+) False ntn2
XM_036946499.1 mRNA downstream 35645 22085331 ~ 22144284 (+) False ntn2
NM_001160640.2 mRNA downstream 267683 22317369 ~ 22329149 (+) True atp6v0cb
TU1545079 other upstream 49155 21999357 ~ 22000251 (+) False LOC110491629
TU1545030 other upstream 368525 21679224 ~ 21680881 (+) True G1351501
TU1544874 other upstream 644289 21402227 ~ 21405117 (+) True G1351366
TU1544755 other upstream 828259 21220765 ~ 21221147 (+) True G1351274
TU1543613 other upstream 2011428 20030730 ~ 20037978 (+) True G1350275
TU1546739 other downstream 582193 22631879 ~ 22632305 (+) True G1353021
TU1547300 other downstream 995583 23045269 ~ 23045884 (+) True G1353519
TU1547339 other downstream 1074173 23123859 ~ 23126311 (+) False LOC110491658
TU1547458 other downstream 1248771 23298457 ~ 23298753 (+) True G1353660
TU1547936 other downstream 1430403 23480089 ~ 23488612 (+) True LOC110491671

Expression Profile