RNA id: TU1546443


Basic Information

Item Value
RNA id TU1546443
length 546
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1352810
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22194315 ~ 22194860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgaactttttggcaacaatgcaaaacgttatgtttggtgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatagtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaacctgatggagtctgcaaaagacctgagactgggacagagatttgtcttctaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgaggaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcaacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaact

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1546440 lncRNA upstream 10546 22183431 ~ 22183769 (+) True G1352807
TU1546434 lncRNA upstream 29977 22163989 ~ 22164338 (+) True G1352801
TU1546428 lncRNA upstream 41488 22152600 ~ 22152827 (+) True G1352795
TU1546349 lncRNA upstream 50053 22143361 ~ 22144262 (+) True ntn2
TU1546339 lncRNA upstream 121517 22072482 ~ 22072798 (+) True G1352713
TU1546448 lncRNA downstream 14788 22209648 ~ 22209860 (+) True G1352815
TU1546456 lncRNA downstream 23612 22218472 ~ 22220231 (+) True G1352821
TU1546493 lncRNA downstream 96583 22291443 ~ 22293474 (+) True G1352858
TU1546567 lncRNA downstream 254863 22449723 ~ 22493464 (+) True G1352922
TU1546592 lncRNA downstream 323205 22518065 ~ 22518609 (+) True G1352942
XM_036946498.1 mRNA upstream 50031 22081108 ~ 22144284 (+) False ntn2
XM_036946500.1 mRNA upstream 50031 22085330 ~ 22144284 (+) False ntn2
XM_036946497.1 mRNA upstream 50031 22085331 ~ 22144284 (+) False ntn2
XM_036946499.1 mRNA upstream 50031 22085331 ~ 22144284 (+) False ntn2
XM_021565214.2 mRNA upstream 157072 22034623 ~ 22037243 (+) True nog2
NM_001160640.2 mRNA downstream 122509 22317369 ~ 22329149 (+) True atp6v0cb
XM_021565227.2 mRNA downstream 147454 22342314 ~ 22353831 (+) True spsb3b
XM_036946504.1 mRNA downstream 162724 22357584 ~ 22366233 (+) False mfsd1l
XR_002468858.2 mRNA downstream 165032 22359892 ~ 22365333 (+) False mfsd1l
XM_021565225.2 mRNA downstream 165034 22359894 ~ 22366233 (+) False mfsd1l
TU1545079 other upstream 194064 21999357 ~ 22000251 (+) False LOC110491629
TU1545030 other upstream 513434 21679224 ~ 21680881 (+) True G1351501
TU1544874 other upstream 789198 21402227 ~ 21405117 (+) True G1351366
TU1544755 other upstream 973168 21220765 ~ 21221147 (+) True G1351274
TU1543613 other upstream 2156337 20030730 ~ 20037978 (+) True G1350275
TU1546739 other downstream 437019 22631879 ~ 22632305 (+) True G1353021
TU1547300 other downstream 850409 23045269 ~ 23045884 (+) True G1353519
TU1547339 other downstream 928999 23123859 ~ 23126311 (+) False LOC110491658
TU1547458 other downstream 1103597 23298457 ~ 23298753 (+) True G1353660
TU1547936 other downstream 1285229 23480089 ~ 23488612 (+) True LOC110491671

Expression Profile