RNA id: TU1547902


Basic Information

Item Value
RNA id TU1547902
length 244
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1354070
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23373987 ~ 23374230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attatataaaaatataggacaaaacacacatcacgacatgagacaacactacataaagagagacctaagacaacaacatagcacggcaggaacacatgacaacacagcatgttagcaacacaacatgacaacaacacggtagaaacacaacatggcagcagcacaacatggtagcagcacaaaacagggtacaaacattattgggcacagacaacagcacaaagggcaagaaggtagagacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1547897 lncRNA upstream 3649 23370101 ~ 23370338 (+) True G1354065
TU1547884 lncRNA upstream 25682 23348044 ~ 23348305 (+) True G1354053
TU1547883 lncRNA upstream 26701 23346811 ~ 23347286 (+) True G1354052
TU1547882 lncRNA upstream 28885 23344049 ~ 23345102 (+) True G1354051
TU1547878 lncRNA upstream 34280 23339494 ~ 23339707 (+) True G1354047
TU1547912 lncRNA downstream 10784 23385014 ~ 23385629 (+) True G1354080
TU1547913 lncRNA downstream 11574 23385804 ~ 23386169 (+) True G1354081
TU1547916 lncRNA downstream 16532 23390762 ~ 23395032 (+) True G1354084
TU1547952 lncRNA downstream 78897 23453127 ~ 23459372 (+) True G1354114
TU1547954 lncRNA downstream 79951 23454181 ~ 23460517 (+) True G1354115
XM_036946552.1 mRNA upstream 109678 23248663 ~ 23264309 (+) False LOC110491666
XM_036946553.1 mRNA upstream 110563 23248659 ~ 23263424 (+) False LOC110491666
XM_021565281.2 mRNA upstream 138697 23217413 ~ 23235290 (+) False LOC110491663
XM_021565291.2 mRNA downstream 25166 23399396 ~ 23404624 (+) True LOC110491669
XM_036946560.1 mRNA downstream 56637 23430867 ~ 23488782 (+) False LOC110491671
XM_021565293.2 mRNA downstream 56638 23430868 ~ 23488782 (+) False LOC110491671
NM_001124429.1 mRNA downstream 177563 23551793 ~ 23566332 (+) False becn1
XM_021564381.2 mRNA downstream 178028 23552258 ~ 23567658 (+) True becn1
TU1547458 other upstream 75234 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 247676 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 328103 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 741682 22631879 ~ 22632305 (+) True G1353021
TU1545079 other upstream 1373736 21999357 ~ 22000251 (+) False LOC110491629
TU1547936 other downstream 105859 23480089 ~ 23488612 (+) True LOC110491671
TU1548546 other downstream 619388 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 711478 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 1296209 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 1296369 24670599 ~ 24681115 (+) True LOC110491698

Expression Profile