RNA id: TU1548009


Basic Information

Item Value
RNA id TU1548009
length 1633
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1354168
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23782449 ~ 23784110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCCATTTAAACccattatttatgtatttatttaaatgtgtCCCTTGCAAAAGTGGATATGAAAAACAATGTAAAAGCATTACAAACGTTTTTTTTTACAATGCAGACCCTGTGAATTGGATATGGAATGATGTCATCATAGTAAGAGTAAGAGCGTACTCTGTGCTTCCTTCCTTTTCTGGTAATGGGGATGTTTTGAGCAAATAAAAACGGTGTCCGGAGTCAGTGAAACCTGTCATCAGTGACATCTTGGCTGGAGGTCCAGTTAAAGTTAAGTCTTACAAATGATTGACAGCTTAACTGGCCCATAATCCACAAGGGCAGTTGATTTAAAGGAAACAAGTGCAACATTATATACAGTGAACAAATATCTTAATAACACGTCACATTTATGAATACAAGACACCGACTATGATGCTTCCACTAAAGGAGGAAATGTATTCATGTGATTGAGAGATGatttgtggtgttgatggtataccTGAACATTATATTGACAATAACTGGGAATGTAAGAAGAGAGTGCTGGTTTCACATACAAACAAAGACGCCACACCTCTTTACCAAACGGTCGTTTCAGAGTTGGAgtcctgatctaggatcaggttccccatatccatgtaatcttattcattatgatctgatCCTACAGCAGCACTCCTACTCGAATACGCTATGGATATGGGGCAATGTGCGGTACATAGAATCATAATATACAACACGGCTGGCGTAAAAACATTTAAGCATCATTTTTTTTGCATATCTGAGAGATGTTGCAAGTCAATGCCAACAGCTGAAGGAAACTGTTTATCTGTGAAATGAGAATGCGGGAGAACCCAAAGGCATTTTTTTGTTTTAGCAAAGTGACAGATCGCTAAACCACATGTCTCAGAAATGTTATTTGGACAATGTGCTTATCATGCCAGACTCTTACaaacaggaaatgacaacacGCTGATGAGTAAGTGATGTCATGCGTATGCTATGAGTATCAttatcagtcaatcaatcaaatgtatttataaagccctttttaacgtcagccgatgtcacaaagtgctgtacagaaacccagccctaaaccccaaacagcaagcaacgcagatgtagaagcacagtggctaggaaaaactccctagaaaggcaagaacctaggaagaaaccaagagaggaaccagactctgagggGTGGCCGTCCCCTTCTATTTGTCCTTCGCTTCTCTGTCACTAAAGAAAGTAATGTGCCTAACTCGAGTCACGTCTACTGTCGTACATTTATCTCTCAATGTAGCCGACTCTACTTTCATTAATGGACAGCCTAAGTTACAATTATGGATTTTGAATGAACTTGTTGGTAGTTCATGTTGAAATGCCTCCGGAAAAACATATTTGGTACCGTTTAAATACATATGTACAACAAACCACTACACAAATATTACATCTTCGTCTTGTGACAGTAGAGCCAGCACATGAAATCGTAACATTCCAGAGGAAATTGAAAGAATCCAATGGGATGCAGTTATTTTAATGATCCTTCAAATGATGCAGTCATTTCAGTGATCCTGGTTGCCATCACTCCTTGTTGCCTCTGTATGTGATGTTTGTGAAGGTTGAGGTGGCTCCTTTGTACAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548062 lncRNA upstream 70393 23703899 ~ 23712056 (+) True G1354215
TU1548042 lncRNA upstream 161547 23597617 ~ 23620902 (+) False G1354199
TU1548041 lncRNA upstream 161547 23616444 ~ 23620902 (+) True G1354199
TU1547975 lncRNA upstream 275633 23505186 ~ 23506816 (+) True G1354136
TU1547954 lncRNA upstream 321932 23454181 ~ 23460517 (+) True G1354115
TU1548134 lncRNA downstream 43792 23827902 ~ 23916365 (+) True G1354281
TU1548139 lncRNA downstream 50749 23834859 ~ 23859610 (+) True G1354286
TU1548013 lncRNA downstream 67213 23851323 ~ 23856448 (+) True G1354172
TU1548154 lncRNA downstream 83822 23867932 ~ 23869808 (+) True G1354301
TU1548545 lncRNA downstream 207815 23991925 ~ 23992720 (+) True G1354667
trnaw-cca-55 mRNA upstream 96700 23685678 ~ 23685749 (+) True trnaw-cca-55
trnaw-cca-54 mRNA upstream 97932 23684446 ~ 23684517 (+) True trnaw-cca-54
trnaw-cca-53 mRNA upstream 101072 23681306 ~ 23681377 (+) True trnaw-cca-53
trnaw-cca-52 mRNA upstream 102149 23680229 ~ 23680300 (+) True trnaw-cca-52
trnaw-cca-51 mRNA upstream 103941 23678437 ~ 23678508 (+) True trnaw-cca-51
XM_021565304.2 mRNA downstream 113511 23897621 ~ 23901382 (+) True neurod2
XM_021565305.2 mRNA downstream 145717 23929827 ~ 23952690 (+) True med1
XM_021565307.2 mRNA downstream 317969 24102079 ~ 24147369 (+) False gpam
XM_036946572.1 mRNA downstream 317987 24102097 ~ 24147369 (+) True gpam
XM_036946577.1 mRNA downstream 382080 24166190 ~ 24201252 (+) False LOC110491683
TU1547936 other upstream 293837 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 483696 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 656138 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 736565 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 1150144 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 209508 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 301598 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 886329 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 886489 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 897304 24681414 ~ 24683919 (+) False G1355273

Expression Profile