RNA id: TU1548013


Basic Information

Item Value
RNA id TU1548013
length 5105
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1354172
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23851323 ~ 23856448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtatttggactctttgctatgagactcgaaattgagctcaagtgcatcctgtttccattgatcatccttgagatgctcctacaacttgattgagtcaacctgtggtaaattcaattgattggacatgatttggaaaggctcacacttgtcaatataaggtcccacatttgagagtgcatgtcagagcaaaacagatctggggaagggtaccaaaatatgtctgcagtattgaaggtcactaagaacacattggcctccatcattcttttttttggtcctttttctccccaatttcatggggtccaattgtttttttagtagctactatgttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcatgcgacctccgatacacaacccaaccaagccgcacagcttcttaacacagcgcacattcaaccaggaagccagccgcaccaatgtgtcagaggaaacaccatgcacctggcaaccttggttagtgtgcACTGGGCCCcgcccaccacaggagttgctggtgcgcgatgaaacaaggatatccctaccggccaagccctccctaacccggacaatgctaggccaattgtgcatcgacagagtctgggcgcgaacccagggtctctggtggcacagctggcgctgcagtacagcgcccttaaccattgcaccacccgggaggctggcctccatcattcttaaagaagtttggaaccaccaaggcccttcctagagctggccgctcggccaaactgagtaatctgGGGAGGaaggtcttggtcagggaggtgaccaccggtcactctgacagagctccagagttcctccgtggagatgggagaaccatccagacggacaaccatctctacagcactccaccaatcaggcttttatggtagagtggccagacggaagccactcctcagtaaaaagcagatgacagcccgcttggagttgccaaaaggcacctaaaggactctcagaccacgagtagcaagattctctgctctgatgaaacaagattgaactcttaggtctgaatgccaagcgtcatgtctggaggaaacctgcaccATCcgtacgatgaagcatggtgatggcatcatgctgtggggatgtttttcagcggccgGGACTGGGAGaaaagtcaggatcgagggaaagataaacggagcaaagtacagagagagagatccttgatgaaaacctgctccagagtactcagaacctcagactttGGCAAAGGTTATCCTTCCAacgggacaacgaccctaagcacacagccaagacaatgcaggagtggcttctggacaagtctctgaatgtccttgagtggcccagccagagcccggatttgaacccgatcattcatctctggagagacctgaaaatagctgtgctgtgatgctccccatccaacctgacagagcttgagaggatctgcagagaataatgggagaaaatccacaaatacaagtgtgccaagcttgtacccaagccgactcgaggctgtaatcactgccaaaggtgcttcaaaaaagtactgagtaaagggttcgaatacttatgtcaatgtcatatttcagttttttatttataatacatttgcaaaaattcctataaaacagtttttgctttgtcattatggggtattgtgtgtagattggtgaggggaaaaaaacgatttaatccattttagaataaggctgtaatgtaacaaaatgtggaaaaagtcaaggggtctgaatgctttcccgAATGCCCTGTATGCATTGTTTAAAGTCGTTAGGGCAAGCAAATTGGCTTGTCCCAGTAGCGATAAGTAGAGTAGTAGTGACATGTTTTGGGGATTTAGAGATATCTATCAATTATTTTAAATGCTAGAAAGTCAACCAAATTATTTAAATATTGTATAGATCAATAAAAACAACGAATGCTATTAGAATACTTTTATAAGAATGATATTAAAACCAATATAAGATGTGTCCCTAAGTTTTATTTCATTTGGTGTTACTGCCTTGAATATCACTCATTACAAAGATATACAAGAACCTTGAGCATTCTGTTATTGGGGGAGGGGTCTATATTAAATAAAATTATTAGTTAATCACACCCTTTTAGTATGTCATACATTTGAGGATTTCACTGATCATTTGGTGTGTCTAAATACCAAGTGTCATTGGTGTtagtaaatgtaaataaaaaccTTTGTCAGCCAAATGATTAACCTTACCACTTTAGCAAACAAGAATGATCTCCAGTGTTCTGCAACAGAACCGATACTTTCATCGTTATTATTTTTTGTTCCAAATAGAGTATATTCCTAATGTCTAGTGTAGAACTCGTAAGTCAGTGAAGTGATGATGCCTGTAATAGACTAAACACAATCCTATTCACGTCATGTCATGATGTTCAGTGCTTCAAGCAAAACCCCCTCCATGTCCACccttttctctcgctccctctccccacccatgAAATATCAGTCACTTCTCGTGCCTGCACTTAACAATCAAACATGTAAACAACTAGTTTACCTGTTCCATAGCAAGCAGCTCAATCCCGTACTTATTGGTGGAGTAAATGAATGAGTGAAATTGAAATGAATTGTGAATGCCCCGGATTCAAACCTGTGTTCAGCGACTGGCAAGCCAACACCTTAACTGTTAAATTGTTGGCTTAACAATTGCTGGACCCGGGTTTGAGTCCCGGACTGGGCAACCCCTAAAATTGGCCCCAATATACTTCCATGGTTGGTTAAATTGACTACTTCCCTTAACTGACCGATTTTTAGCTACAACTTCCGAGTCCATTTGAGAGGATCAGCTTAAGCAAAGTGAGGTGTAGAATTACTGATCTACAAACAGTATTCCCTGACAAATAATAGGTTTTGTGTGATTGAGATTCGCAGAGCCACGCCTCCCCTGGCTCAGGCCATCCCCtgccaaacacacatgcacaaccagacattgattggttgattgattcgAGACAGCTTGTGTCAATTACAGAACATTTCCTAGGATTTTCTACCTGCAACAACTAGAGGATAATGCTGGGAATACCGGTCAAATCACAGTGCCTTCATTTCCACAACAAAAAGCATGGACCTAAGCATGAGACGCACAGCTACAATCTGGAACGCGCTCAATGATAAGCATCGTCTCCCCTCCGTGGCTGCACAGCCACCAAGACTGTTCCTCAGACAGTGACGTCTGCAATCTGGAATTCATAAGGAAGTGCTGTCTGGAACACTACCATTCAGCTTAAACACTTGAgaactctctctttttctctctctcgttttatTTCTCtcccactgtgtctctctctttctcacatgcatacaaacagacacacaaagataggcatacatacacacacacacaccagtggcggtcagtaccgtttaagatgagggaggacgatttaTTTAcatcacagcatattggatgactctcgttcatattccattcacctagttcaatgtaacagcaataggttTAGGCCACTACGTGATACTAGAATacttttccctatacccatcatgacgttgctacaacctagcctatgaatgaatgtTTATAACGTAGCTGCACACAGGTTGAGAGACAAATTTGAGGCAACAGACAGTGAcatcaataccaccttgcacaatACCACCTATATCAGCATACcagctgatatagggtgtaatcattagtccaacagttgcaaacgagagtttctattggacaaattcaagtaTGTCTATccctgttttttttctgtttgcttccgtttaataAGCAtatttcaacagaatcggcagaacgAATTACacgcgtaaacacagttcactttcatagcagccacgttgtagtccgcgctctcctcctctcatcttgtCCCTTCGCCtatggacttcaatgcacaacagtaaaaaacctttccaagctgaaccactacacacagcctacatcgttgtcaccatattagctaaagtagcgtcatagtcagcatagttAATAGAACCAACccattagtaaacccgctacaatcacaCAGTAACGTTGGTGTACAGTgccctggtggcaataaattagtaataccaaaagcttaccttgacttggaagagttccagtctTGTATTGGAtggtcatagccagctagctaacatagcatccctctgtttgaacagtgtgtttcagtaggctaaattagctagctgcatttgctaactAAGTGAAATTGAAAGTGAACAAAAAATGACaaaatctctctctatttctcttttgcttctccttcattttagaagaaatacatattttcatacctcttcaactattgtcttttctctctatacactgcagtgctagctagctgtagcttatgatttcagtactagattaattatctgattattttattgggtggacaacatgtcagttcatgctgcaagaaaTCTGGTAggctggaggatgtcctccggaagttgtcataattactgtgtaagtctatggatgGGTTGAGAACCTCGTGCCTCctgggttttgtattgaagtcaatgtacctagaggaggactgaagctagctgtcctccggctacaccatgatgctaccctacagagtgctgttgaggctactggagaccttctttgcaaaatagtgtgttttaatcaattgttCGGTGACGTGATTGTATTTAGtattgttttatctaaaaataCTAACTTTTTGAATGTtttacaatttacatttttatgaaattcactgaggaggatggtcctccccttcctcctctgaggagcctccactgacacacacacacacacacgaatgcaaGCAAGCACACGCACAActgcacaaacgcacacacgcacgcacacacacgtattTAGATATTTTCTCCACGCTCTTTATATAATAATTAGAAAACATCACTCTGGATCGTCAATCATCTTTTGCCACAGAATCTGAATCTCctctctgtaacacacagcgCTCTGTTATTCTCCCTTCTTCTTTGGCCTTCTTGGTCCACcttttcccctcttctcctcatcatccagctcctcttcctcctctccgtGTGGGACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548009 lncRNA upstream 67213 23782449 ~ 23784110 (+) True G1354168
TU1548062 lncRNA upstream 139267 23703899 ~ 23712056 (+) True G1354215
TU1548042 lncRNA upstream 230421 23597617 ~ 23620902 (+) False G1354199
TU1548041 lncRNA upstream 230421 23616444 ~ 23620902 (+) True G1354199
TU1547975 lncRNA upstream 344507 23505186 ~ 23506816 (+) True G1354136
TU1548154 lncRNA downstream 11484 23867932 ~ 23869808 (+) True G1354301
TU1548545 lncRNA downstream 135477 23991925 ~ 23992720 (+) True G1354667
TU1548547 lncRNA downstream 136435 23992883 ~ 23993194 (+) True G1354669
TU1548551 lncRNA downstream 146995 24003443 ~ 24003684 (+) True G1354673
TU1548580 lncRNA downstream 190371 24046819 ~ 24047201 (+) True G1354697
trnaw-cca-55 mRNA upstream 165574 23685678 ~ 23685749 (+) True trnaw-cca-55
trnaw-cca-54 mRNA upstream 166806 23684446 ~ 23684517 (+) True trnaw-cca-54
trnaw-cca-53 mRNA upstream 169946 23681306 ~ 23681377 (+) True trnaw-cca-53
trnaw-cca-52 mRNA upstream 171023 23680229 ~ 23680300 (+) True trnaw-cca-52
trnaw-cca-51 mRNA upstream 172815 23678437 ~ 23678508 (+) True trnaw-cca-51
XM_021565304.2 mRNA downstream 41173 23897621 ~ 23901382 (+) True neurod2
XM_021565305.2 mRNA downstream 73379 23929827 ~ 23952690 (+) True med1
XM_021565307.2 mRNA downstream 245631 24102079 ~ 24147369 (+) False gpam
XM_036946572.1 mRNA downstream 245649 24102097 ~ 24147369 (+) True gpam
XM_036946577.1 mRNA downstream 309742 24166190 ~ 24201252 (+) False LOC110491683
TU1547936 other upstream 362711 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 552570 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 725012 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 805439 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 1219018 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 137170 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 229260 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 813991 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 814151 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 824966 24681414 ~ 24683919 (+) False G1355273

Expression Profile