RNA id: TU1549304


Basic Information

Item Value
RNA id TU1549304
length 266
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1355366
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24880828 ~ 24881093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaccaatcaagccctcgaggactggaattgcccacccctgccttacagtgaaatgcttacttatgagcccctaaccaacagtgcagtttaaaaaaaaaaataacactgtttatttgcctcgaagcgagcatagaagtagtttagctcgtctggtaggctcgtcactgggcagctcttggctgtacatccctttgtagtctgtaatggtttgcaagtcctgccacatccgacaagcgtcagagcaGGTGTAGTACGACTCtatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549295 lncRNA upstream 8216 24872029 ~ 24872612 (+) True G1355357
TU1549294 lncRNA upstream 9540 24870960 ~ 24871288 (+) True G1355356
TU1549289 lncRNA upstream 10752 24865054 ~ 24870076 (+) False G1355352
TU1549290 lncRNA upstream 10752 24865054 ~ 24870076 (+) True G1355352
TU1549246 lncRNA upstream 121685 24757050 ~ 24759143 (+) True pus3
TU1549313 lncRNA downstream 9334 24890427 ~ 24896780 (+) False ifn5
TU1549312 lncRNA downstream 15340 24896433 ~ 24897741 (+) True ifn5
TU1549317 lncRNA downstream 19958 24901051 ~ 24901362 (+) True G1355377
TU1549335 lncRNA downstream 57695 24938788 ~ 24939064 (+) True G1355394
TU1549379 lncRNA downstream 120546 25001639 ~ 25002613 (+) True G1355435
XM_021567359.2 mRNA upstream 19698 24857512 ~ 24861130 (+) True ccr10
XM_036946592.1 mRNA upstream 51510 24826163 ~ 24829318 (+) False LOC110491705
XM_021564390.2 mRNA downstream 8008 24889101 ~ 24892671 (+) False ifn5
NM_001159339.1 mRNA downstream 8929 24890022 ~ 24892671 (+) False ifn5
trnaa-ugc-127 mRNA downstream 150236 25031329 ~ 25031399 (+) True trnaa-ugc-127
XM_021565361.2 mRNA downstream 164599 25045692 ~ 25090054 (+) False mapta
XM_021565371.2 mRNA downstream 164663 25045756 ~ 25090054 (+) False mapta
TU1549230 other upstream 97316 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 196909 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 199713 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 200109 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 790794 24085708 ~ 24090034 (+) True G1354681
TU1550905 other downstream 1195448 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 1423858 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 1425399 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 1430603 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 1430603 26311696 ~ 26314801 (+) True mpp3b

Expression Profile