RNA id: TU1552423


Basic Information

Item Value
RNA id TU1552423
length 345
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1358203
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27168046 ~ 27168390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctgacatgaccaaccagcatgacaatgccaccagcatactgctcgttctgtgcgtgatttcctgcaagacaggaatgtcagtgttctgccatggccagcgaagagcctggatctcaatcccattgagcacgtctgggacctgttggatcggagggtgagggtgagggccattccctccagaaatgtccaggaacttgcaggtgccttggtggaagagtggggtaacatctcacagcaagaactggcaaatctggtgcagtccatgaggaggagatgcactgcagtacttaatgcaatTGGTGGccaaaccagatactgactgttacttttgattttgaccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1552422 lncRNA upstream 758 27167027 ~ 27167288 (+) True G1358202
TU1552409 lncRNA upstream 12622 27155027 ~ 27155424 (+) True G1358189
TU1552356 lncRNA upstream 64943 27095847 ~ 27103103 (+) True G1358143
TU1552355 lncRNA upstream 65368 27095249 ~ 27102678 (+) True G1358142
TU1552295 lncRNA upstream 107529 27058400 ~ 27060517 (+) True G1358087
TU1552425 lncRNA downstream 1071 27169461 ~ 27169683 (+) True G1358205
TU1552437 lncRNA downstream 22092 27190482 ~ 27190718 (+) True G1358217
TU1552441 lncRNA downstream 26074 27194464 ~ 27194671 (+) True G1358221
TU1552443 lncRNA downstream 29641 27198031 ~ 27198246 (+) True G1358223
TU1552466 lncRNA downstream 82879 27251269 ~ 27252172 (+) True G1358245
XR_002469086.2 mRNA upstream 68826 27098269 ~ 27099220 (+) True LOC110492891
XM_021567337.2 mRNA upstream 122531 27018092 ~ 27045515 (+) True LOC110492862
XM_036946630.1 mRNA upstream 169691 26994629 ~ 26998355 (+) False LOC110492861
XM_036946629.1 mRNA upstream 169691 26994657 ~ 26998355 (+) True LOC110492861
XM_036946621.1 mRNA upstream 590893 26495038 ~ 26577153 (+) True ngfrb
XR_005036496.1 mRNA downstream 164440 27332830 ~ 27341264 (+) False LOC110491761
XR_002468890.2 mRNA downstream 164446 27332836 ~ 27341264 (+) False LOC110491761
XR_005036493.1 mRNA downstream 164449 27332839 ~ 27341264 (+) False LOC110491761
XR_005036494.1 mRNA downstream 164450 27332840 ~ 27341264 (+) False LOC110491761
XR_005036498.1 mRNA downstream 164451 27332841 ~ 27341264 (+) False LOC110491761
TU1551395 other upstream 853245 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other upstream 853245 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other upstream 853245 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other upstream 853245 26311696 ~ 26314801 (+) True mpp3b
TU1550905 other upstream 1078663 26076541 ~ 26089383 (+) True znf281b
TU1552517 other downstream 160921 27329311 ~ 27332275 (+) True G1358292
TU1552634 other downstream 392757 27561147 ~ 27577092 (+) True LOC110491768
TU1552849 other downstream 734660 27903050 ~ 27945841 (+) False LOC110491776
TU1552979 other downstream 878292 28046682 ~ 28047390 (+) True G1358698
TU1555703 other downstream 2634264 29802654 ~ 29804368 (+) True G1361207

Expression Profile