RNA id: TU1552425


Basic Information

Item Value
RNA id TU1552425
length 223
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1358205
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27169461 ~ 27169683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcacatgttactatggaatactgaagttaaattacaagcatttcctaagtgtcaaaggcttttattgacaattacatgaagttgatgcaaagagtcaatatttgcagtgatgacccttctttttcaagacctctgcaatccgccctggcatgctgtcaattaacttctgggccacatcctgactgatggcagcccattattgcataatcaatgcttggagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1552423 lncRNA upstream 1071 27168046 ~ 27168390 (+) True G1358203
TU1552422 lncRNA upstream 2173 27167027 ~ 27167288 (+) True G1358202
TU1552409 lncRNA upstream 14037 27155027 ~ 27155424 (+) True G1358189
TU1552356 lncRNA upstream 66358 27095847 ~ 27103103 (+) True G1358143
TU1552355 lncRNA upstream 66783 27095249 ~ 27102678 (+) True G1358142
TU1552437 lncRNA downstream 20799 27190482 ~ 27190718 (+) True G1358217
TU1552441 lncRNA downstream 24781 27194464 ~ 27194671 (+) True G1358221
TU1552443 lncRNA downstream 28348 27198031 ~ 27198246 (+) True G1358223
TU1552466 lncRNA downstream 81586 27251269 ~ 27252172 (+) True G1358245
TU1552515 lncRNA downstream 163287 27332970 ~ 27341202 (+) True LOC110491761
XR_002469086.2 mRNA upstream 70241 27098269 ~ 27099220 (+) True LOC110492891
XM_021567337.2 mRNA upstream 123946 27018092 ~ 27045515 (+) True LOC110492862
XM_036946630.1 mRNA upstream 171106 26994629 ~ 26998355 (+) False LOC110492861
XM_036946629.1 mRNA upstream 171106 26994657 ~ 26998355 (+) True LOC110492861
XM_036946621.1 mRNA upstream 592308 26495038 ~ 26577153 (+) True ngfrb
XR_005036496.1 mRNA downstream 163147 27332830 ~ 27341264 (+) False LOC110491761
XR_002468890.2 mRNA downstream 163153 27332836 ~ 27341264 (+) False LOC110491761
XR_005036493.1 mRNA downstream 163156 27332839 ~ 27341264 (+) False LOC110491761
XR_005036494.1 mRNA downstream 163157 27332840 ~ 27341264 (+) False LOC110491761
XR_005036498.1 mRNA downstream 163158 27332841 ~ 27341264 (+) False LOC110491761
TU1551395 other upstream 854660 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other upstream 854660 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other upstream 854660 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other upstream 854660 26311696 ~ 26314801 (+) True mpp3b
TU1550905 other upstream 1080078 26076541 ~ 26089383 (+) True znf281b
TU1552517 other downstream 159628 27329311 ~ 27332275 (+) True G1358292
TU1552634 other downstream 391464 27561147 ~ 27577092 (+) True LOC110491768
TU1552849 other downstream 733367 27903050 ~ 27945841 (+) False LOC110491776
TU1552979 other downstream 876999 28046682 ~ 28047390 (+) True G1358698
TU1555703 other downstream 2632971 29802654 ~ 29804368 (+) True G1361207

Expression Profile