RNA id: TU1552625


Basic Information

Item Value
RNA id TU1552625
length 270
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1358397
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27539560 ~ 27539829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccacacaaaatattgacactttgggcccaatttggacattttcacttaggggtgtactcacttttgttgccagcggtttagacattaatggctgtgtgttgagttattttgaggggacagcaaatttacactgttatacaagctgtacactcactactttacattgtagcaaagtgtaatttcttcagtgttgtcacatgaaaatatatactcaaatatttacaaaaatgtgaggggtgtactcacttttgtgatatactgtatataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1552570 lncRNA upstream 29125 27509618 ~ 27510435 (+) True G1358342
TU1552515 lncRNA upstream 198358 27332970 ~ 27341202 (+) True LOC110491761
TU1552466 lncRNA upstream 287388 27251269 ~ 27252172 (+) True G1358245
TU1552443 lncRNA upstream 341314 27198031 ~ 27198246 (+) True G1358223
TU1552441 lncRNA upstream 344889 27194464 ~ 27194671 (+) True G1358221
TU1552626 lncRNA downstream 1870 27541699 ~ 27541936 (+) True G1358398
TU1552683 lncRNA downstream 60686 27600515 ~ 27601054 (+) True G1358437
TU1552653 lncRNA downstream 120900 27660729 ~ 27759730 (+) True G1358411
TU1552657 lncRNA downstream 129020 27668849 ~ 27687905 (+) True G1358412
TU1552724 lncRNA downstream 280148 27819977 ~ 27823580 (+) True LOC110491775
XM_021567338.2 mRNA upstream 34926 27501331 ~ 27504634 (+) False LOC110492863
XM_036946675.1 mRNA upstream 34926 27501331 ~ 27504634 (+) False LOC110492863
XM_036946676.1 mRNA upstream 34926 27501331 ~ 27504634 (+) True LOC110492863
XM_036946672.1 mRNA upstream 38673 27431152 ~ 27500887 (+) False cmn
XM_021565505.2 mRNA downstream 21312 27561141 ~ 27595350 (+) False LOC110491768
XM_021565506.2 mRNA downstream 34701 27574530 ~ 27595350 (+) False LOC110491768
XM_036946678.1 mRNA downstream 55599 27595428 ~ 27646077 (+) True sult1st6
XM_021565511.2 mRNA downstream 163554 27703383 ~ 27727796 (+) True LOC110491774
XM_036946681.1 mRNA downstream 236453 27776282 ~ 27823581 (+) False LOC110491775
TU1552517 other upstream 207285 27329311 ~ 27332275 (+) True G1358292
TU1551395 other upstream 1224759 26304951 ~ 26314801 (+) False mpp3b
TU1552634 other downstream 21318 27561147 ~ 27577092 (+) True LOC110491768
TU1552849 other downstream 363221 27903050 ~ 27945841 (+) False LOC110491776
TU1552979 other downstream 506853 28046682 ~ 28047390 (+) True G1358698
TU1555703 other downstream 2262825 29802654 ~ 29804368 (+) True G1361207
TU1556224 other downstream 2403612 29943441 ~ 29943756 (+) True G1361671

Expression Profile