RNA id: TU1555598


Basic Information

Item Value
RNA id TU1555598
length 208
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1361114
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29656461 ~ 29656668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttagcaccccattatttttatttctactttgcacattcttccattgcaaaactagcattccagtgttttacttgctatattgtatttaccttgccaccatggccttttttgcctttacctcccttctcaccgcatttgctcacattgtatatagacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1555519 lncRNA upstream 6237 29629148 ~ 29650224 (+) False G1361046
TU1555521 lncRNA upstream 6237 29629148 ~ 29650224 (+) False G1361046
TU1555523 lncRNA upstream 6237 29629148 ~ 29650224 (+) False G1361046
TU1555517 lncRNA upstream 6237 29646943 ~ 29650224 (+) False G1361046
TU1555520 lncRNA upstream 6237 29646943 ~ 29650224 (+) False G1361046
TU1555641 lncRNA downstream 84083 29740751 ~ 29741079 (+) True G1361155
TU1556059 lncRNA downstream 168845 29825513 ~ 29825718 (+) True G1361517
TU1556066 lncRNA downstream 171902 29828570 ~ 29828796 (+) True G1361524
TU1556071 lncRNA downstream 176292 29832960 ~ 29833175 (+) True G1361529
TU1556136 lncRNA downstream 283486 29940154 ~ 29940377 (+) True G1361592
XM_021565561.2 mRNA upstream 27450 29534042 ~ 29629011 (+) True LOC110491797
XR_005036502.1 mRNA upstream 39433 29534042 ~ 29617028 (+) False LOC110491797
XR_005036501.1 mRNA upstream 144852 29503409 ~ 29511609 (+) False LOC110491796
XR_002468904.2 mRNA upstream 144852 29503710 ~ 29511609 (+) True LOC110491796
NM_001257262.1 mRNA upstream 164004 29481724 ~ 29492457 (+) True irf3
XM_021565564.2 mRNA downstream 57610 29714278 ~ 29727319 (+) True LOC110491799
XM_021565565.2 mRNA downstream 119772 29776440 ~ 29779141 (+) True LOC110491800
XM_021565566.2 mRNA downstream 250624 29907292 ~ 29925164 (+) True LOC110491801
XM_021565567.2 mRNA downstream 485761 30142429 ~ 30144341 (+) True LOC110491802
XM_036945881.1 mRNA downstream 942726 30599394 ~ 30658325 (+) True LOC110491805
TU1552979 other upstream 1609071 28046682 ~ 28047390 (+) True G1358698
TU1552849 other upstream 1710620 27903050 ~ 27945841 (+) False LOC110491776
TU1552634 other upstream 2079369 27561147 ~ 27577092 (+) True LOC110491768
TU1552517 other upstream 2324186 27329311 ~ 27332275 (+) True G1358292
TU1551398 other upstream 3341660 26311696 ~ 26314801 (+) True mpp3b
TU1555703 other downstream 145986 29802654 ~ 29804368 (+) True G1361207
TU1556224 other downstream 286773 29943441 ~ 29943756 (+) True G1361671
TU1557278 other downstream 1046979 30703647 ~ 30704108 (+) True LOC110492869
TU1557509 other downstream 1297941 30954609 ~ 30955975 (+) True G1362902
TU1558037 other downstream 1577825 31234493 ~ 31235386 (+) True G1363401

Expression Profile