RNA id: TU1559113


Basic Information

Item Value
RNA id TU1559113
length 705
RNA type TUCP
GC content 0.43
exon number 1
gene id G1364348
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 32018794 ~ 32019498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacatgcactgtgaaagtctcagaggtctgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaggatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccataatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctagcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1559112 lncRNA downstream 1147 32017413 ~ 32017647 (-) True G1364347
TU1559068 lncRNA downstream 72238 31946321 ~ 31946556 (-) True G1364313
TU1558863 lncRNA downstream 96411 31920896 ~ 31922383 (-) True G1364124
TU1558860 lncRNA downstream 99434 31913091 ~ 31919360 (-) True G1364123
TU1558854 lncRNA downstream 111304 31901494 ~ 31907490 (-) True G1364117
TU1559122 lncRNA upstream 12396 32031894 ~ 32032230 (-) True G1364357
TU1559123 lncRNA upstream 12853 32032351 ~ 32032690 (-) True G1364358
TU1559131 lncRNA upstream 25093 32044591 ~ 32045093 (-) True G1364366
TU1559106 lncRNA upstream 35111 32054609 ~ 32056554 (-) True G1364341
TU1559191 lncRNA upstream 119640 32139138 ~ 32191970 (-) True G1364424
XM_036946723.1 mRNA downstream 28998 31966722 ~ 31989796 (-) False LOC110491820
XM_021565608.2 mRNA downstream 29011 31966999 ~ 31989783 (-) True LOC110491820
XM_021565603.2 mRNA downstream 60792 31950519 ~ 31958002 (-) True ttc34
XM_021565604.2 mRNA downstream 60793 31950519 ~ 31958001 (-) False ttc34
XM_021565602.2 mRNA downstream 289851 31712301 ~ 31728943 (-) True si:ch211-28p3.4
XM_021565612.2 mRNA upstream 37450 32056948 ~ 32096133 (-) True LOC110491822
XR_002468909.2 mRNA upstream 62209 32081707 ~ 32086786 (-) True LOC110491823
XM_036946725.1 mRNA upstream 210789 32230287 ~ 32301791 (-) False LOC110491825
XM_021565614.2 mRNA upstream 210789 32230287 ~ 32350851 (-) False LOC110491825
XM_021565616.2 mRNA upstream 210789 32230287 ~ 32350851 (-) False LOC110491825
TU1558829 other downstream 132682 31885749 ~ 31886112 (-) True G1364105
TU1558520 other downstream 368097 31639437 ~ 31650697 (-) True G1363836
TU1556170 other downstream 2093640 29923871 ~ 29925154 (-) True G1361619
TU1555797 other downstream 2521239 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 3837854 28177715 ~ 28180940 (-) True taok2b
TU1559908 other upstream 614967 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 615065 32634563 ~ 32635511 (-) True G1365099
TU1561599 other upstream 1664513 33684011 ~ 33684473 (-) True G1366703
TU1561654 other upstream 1727902 33747400 ~ 33751407 (-) True G1366756
TU1561592 other upstream 1844008 33863506 ~ 33869898 (-) False LOC110491043

Expression Profile