RNA id: TU1569265


Basic Information

Item Value
RNA id TU1569265
length 239
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1373617
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 40141099 ~ 40141337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaataacacatatggaatcatgtagtaaccaaaaaagtgttcaacaaatcaaaatagattttagattttagattcttcaaagtagccaccctttgccttgatgacagccttgcacactcttggcattctctcaaccaacttcacgaggaatgcttttccaacattcttgaaggagttccctaaTCTtgaaggaggtgaccaagaacccaatggtcactctgacagagctccatagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1569260 lncRNA downstream 11588 40128817 ~ 40129511 (-) True G1373612
TU1569258 lncRNA downstream 23539 40117263 ~ 40117560 (-) True G1373610
TU1569250 lncRNA downstream 40766 40099982 ~ 40100333 (-) True G1373602
TU1569246 lncRNA downstream 53246 40087634 ~ 40087853 (-) True G1373598
TU1569234 lncRNA downstream 97912 40042689 ~ 40043187 (-) False G1373587
TU1569268 lncRNA upstream 2438 40143775 ~ 40144003 (-) True G1373620
TU1569269 lncRNA upstream 2705 40144042 ~ 40144250 (-) True G1373621
TU1569286 lncRNA upstream 35473 40176810 ~ 40179188 (-) False G1373637
TU1569287 lncRNA upstream 35473 40176810 ~ 40179188 (-) True G1373637
TU1569305 lncRNA upstream 85703 40227040 ~ 40227440 (-) True G1373655
XM_021565843.2 mRNA downstream 9691 40121155 ~ 40131408 (-) True LOC110491951
XM_021565845.2 mRNA downstream 9713 40121155 ~ 40131386 (-) False LOC110491951
XM_021565846.2 mRNA downstream 9728 40121155 ~ 40131371 (-) False LOC110491951
XM_021565844.2 mRNA downstream 9748 40121155 ~ 40131351 (-) False LOC110491951
XM_036946859.1 mRNA downstream 22029 40080690 ~ 40119070 (-) False LOC110491948
XM_021565852.2 mRNA upstream 40589 40181926 ~ 40192481 (-) False LOC110491955
XM_021565851.2 mRNA upstream 40589 40181926 ~ 40192482 (-) False LOC110491955
XM_021565848.2 mRNA upstream 40589 40181926 ~ 40194006 (-) False LOC110491955
XM_021565849.2 mRNA upstream 40589 40181926 ~ 40194006 (-) True LOC110491955
XM_021565854.2 mRNA upstream 68645 40209982 ~ 40213414 (-) True neurod4
TU1569212 other downstream 56273 40082457 ~ 40084826 (-) True LOC110491948
TU1569124 other downstream 198071 39940222 ~ 39943028 (-) True G1373490
TU1569001 other downstream 420122 39719864 ~ 39720977 (-) True G1373378
TU1568834 other downstream 605800 39529924 ~ 39535299 (-) True G1373226
TU1568802 other downstream 718247 39422150 ~ 39422852 (-) True G1373200
TU1569967 other upstream 381660 40522997 ~ 40525278 (-) False G1374237
TU1569961 other upstream 381722 40523059 ~ 40525278 (-) False G1374237
TU1569962 other upstream 381757 40523094 ~ 40525278 (-) False G1374237
TU1570054 other upstream 711421 40852758 ~ 40854589 (-) True rps26
TU1570242 other upstream 885438 41026775 ~ 41029406 (-) True G1374491

Expression Profile