RNA id: TU1569268


Basic Information

Item Value
RNA id TU1569268
length 229
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1373620
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 40143775 ~ 40144003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGAACGGGTATCAAAACATTtcggcagcattgaaggtccccaagaacacagtggcctgcatcattcttaaatggaagaagtttggaactaccaagactcttcctagagctggccgcctggccaaactgagcaatcgggggaggagggccttggtcagggaggtgatcaagaacccaatggttactctgacatagctccatagttcctctgtagagatggaagaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1569265 lncRNA downstream 2438 40141099 ~ 40141337 (-) True G1373617
TU1569260 lncRNA downstream 14264 40128817 ~ 40129511 (-) True G1373612
TU1569258 lncRNA downstream 26215 40117263 ~ 40117560 (-) True G1373610
TU1569250 lncRNA downstream 43442 40099982 ~ 40100333 (-) True G1373602
TU1569246 lncRNA downstream 55922 40087634 ~ 40087853 (-) True G1373598
TU1569269 lncRNA upstream 39 40144042 ~ 40144250 (-) True G1373621
TU1569286 lncRNA upstream 32807 40176810 ~ 40179188 (-) False G1373637
TU1569287 lncRNA upstream 32807 40176810 ~ 40179188 (-) True G1373637
TU1569305 lncRNA upstream 83037 40227040 ~ 40227440 (-) True G1373655
TU1569306 lncRNA upstream 85450 40229453 ~ 40229709 (-) True G1373656
XM_021565843.2 mRNA downstream 12367 40121155 ~ 40131408 (-) True LOC110491951
XM_021565845.2 mRNA downstream 12389 40121155 ~ 40131386 (-) False LOC110491951
XM_021565846.2 mRNA downstream 12404 40121155 ~ 40131371 (-) False LOC110491951
XM_021565844.2 mRNA downstream 12424 40121155 ~ 40131351 (-) False LOC110491951
XM_036946860.1 mRNA downstream 24705 40080690 ~ 40119070 (-) False LOC110491948
XM_021565852.2 mRNA upstream 37923 40181926 ~ 40192481 (-) False LOC110491955
XM_021565851.2 mRNA upstream 37923 40181926 ~ 40192482 (-) False LOC110491955
XM_021565848.2 mRNA upstream 37923 40181926 ~ 40194006 (-) False LOC110491955
XM_021565849.2 mRNA upstream 37923 40181926 ~ 40194006 (-) True LOC110491955
XM_021565854.2 mRNA upstream 65979 40209982 ~ 40213414 (-) True neurod4
TU1569212 other downstream 58949 40082457 ~ 40084826 (-) True LOC110491948
TU1569124 other downstream 200747 39940222 ~ 39943028 (-) True G1373490
TU1569001 other downstream 422798 39719864 ~ 39720977 (-) True G1373378
TU1568834 other downstream 608476 39529924 ~ 39535299 (-) True G1373226
TU1568802 other downstream 720923 39422150 ~ 39422852 (-) True G1373200
TU1569967 other upstream 378994 40522997 ~ 40525278 (-) False G1374237
TU1569961 other upstream 379056 40523059 ~ 40525278 (-) False G1374237
TU1569962 other upstream 379091 40523094 ~ 40525278 (-) False G1374237
TU1570054 other upstream 708755 40852758 ~ 40854589 (-) True rps26
TU1570242 other upstream 882772 41026775 ~ 41029406 (-) True G1374491

Expression Profile