RNA id: TU1569967


Basic Information

Item Value
RNA id TU1569967
length 2282
RNA type TUCP
GC content 0.50
exon number 1
gene id G1374237
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 40522997 ~ 40525278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTCCCGTTTATTCAAATGTACATGCAGTCTTAACTTCAACTAAGTTGTCTGTGAAAGTGATACATTATTTACAAAGTCTTCCAACAAATTGTGGTTTGTACACATAGGAATGGCAATTCACATTCTGATTAAATAACAAGAATCAATTTCAGCAACAGATGAAACTGAGATAGGGGTTTATATATCCATGAATAAAACATTATAACACTGATCCCACAATCAACCGTCAGATCAATATATACATTTGGCCAAAAATCAACCGATATGTGGTATACTTAATTCAGATACATTTTCTTCCTCGTGTAATTCACATTCCATTATCAAAAATTGTTTCTGAATTCCAGATTCTAAAAGATGAAACGTGCAGAAAGTGGATCACTTGCATGTTACATAAATTTGCTGAATGATTGATATTTCAATATTACAAATGaaatcaaaaataaaatgaaGACCTCGGGAATTGTTATTTATCATGACTAATCTATTCAAGCTGCTATCCACTTTGCTACTTAAAAACAGTCTtcgtttagattttttttttaaatcaatcatACTGTATATTCTATTATGTACCTACCTTTAACACTAGTTTTTATGTTATTTTTGGACTTTTGTAGTTGGCATTTGATTCTTGATTGATATTATGGCACTGCATTGTTGAGTTagcaagcaagcatttcactgtaccgtgtGCACGTGACCAAccaaaactttgatttgatttgaccgtGGACATTGACAGCTGATTCATGTGGGAACCAGGTTATACTGTCACCATCAAAGGTAAAGAGTGGCTACCCCCTTTGCTATGGGAGATCCTTTTTTGTGCGACACCTAGAAATGCCCAGTGAACGCTCTGTGTCCATATCAACAATCCTGAACCTCGCCACTCGATTTGCTTCCCTTGTTGTGAAATACCTCTCAAAAGCGTTTTGCTGACGGGCTGAAAATGGTCACGACTACAGAGGTTAATAGTCTATAGGTTGTCCTTGTGGTCCGCACCACTCTCCCTCAGAGGGTCTGTGGCAGTTACAGTACCATCACATATTGCAGTCTCTTGGCTCTATATAGAGTCTATTGAATCCCCCCCTCTAGTCCGTTCTACTCTCTCTTGATATTGGCCAACAGAGAGTCTGACGTGTTCCCACCGGACCGGCTCTTCCTACTCTGGTGAGTCTTGACGTGTTTGGAGAGGTGGTCGCTCCTCATGAACCTCTTCCCGCACTGCTGGCATCCGAACCTCTTCTCCCCGGTGTGTGTTCTGAGGTGGCGTTGTAGCTCGTCGGAGCGCGTGAAGCTCTTCCCGCAGAACAGCCAGTTGCAGATGAACGGCCTCTCCCCGGCATGCCAGCGCAGGTGGGCCTTCAGGTGAGACGTCTTCTTGTACACCTTGCCGCACTCTGGGATATGACAGATGTGCAGTCGTTTCTTGCCAAACTCGAGTCCCCCGCCGTTGGCCTGGCAGTTGGGGCACTTGCAGCGACGGCAGCGGCGTGTGGAGGATAACAGGCCCTTGGAGGTGCCCTGTAGGAGGGCTGCGATTTGGGGCTGGTGGCCCAGGACCAGCTGCCGGCCCAGGGAAAAGGGGTGGTGGTTGGTGGGGCTTCCGTGGCCAGTGGTCTGGGGGAGGCTCCACCAGCCCTGCTGGCCCTCCTCCCCTACATGGTGTTGTCCGCCGGATAGATGGTGCCTGGCGGAGGATACAGAGTTCTGAAAGAAGCCGGGGAAGTTTTGTCCCACAGAGACTCCATTATGCTGGGGGTAGTACTGCGGCCCATTGGGACCCTGGCTCTGGGATGAGAGGACCTTGACGGGGGAGAGCTCGAAAGAGTAGGCGGAGGGAGGCTCGGCCGGCGGAGTCAGGGGCAgctcgtggtggtggtggtgatggtggtggtgatggtagagcGCGTGGGGGTGAGGACCCAGGCCAGAAGGCAGACTCTGTCCAGGGCCAACAGGGAACTGGACCTTGGGCACCGCGAATGTCATCTGATGTGCGGCTGCAGTGAGACTGGAGGCGCTGAGACTAGAACTAGGGGCCACCGCCACCTCGTTGCTCCAGAGCTGGAACATCCCGGAGGCTGAGCTCACCCCCACCGCCCCCTCATAGGGGAACTGGGAGCTCTCAGAGCCCACCGTGCCACCCACCTGCCAGGCCTGGCTACAGGTGGTGGCCAGGAAGGACAGGGCGTTGGGGGCTCCCTCTGGGGACGAGCTGGGGGTCCGGTCCTGGTGGAAGATGGATAAAGAACATAATTCACTAACTCATTCTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1569960 lncRNA downstream 516 40522079 ~ 40522481 (-) True G1374236
TU1569955 lncRNA downstream 14553 40507927 ~ 40508444 (-) True G1374231
TU1569954 lncRNA downstream 15184 40507612 ~ 40507813 (-) True G1374230
TU1569913 lncRNA downstream 79805 40440934 ~ 40443192 (-) True LOC110491958
TU1569912 lncRNA downstream 85735 40434504 ~ 40437262 (-) False LOC110491958
TU1569995 lncRNA upstream 27715 40552993 ~ 40553407 (-) True G1374255
TU1570062 lncRNA upstream 261949 40787227 ~ 40788901 (-) True G1374320
TU1570067 lncRNA upstream 319120 40844398 ~ 40845412 (-) True G1374325
TU1570070 lncRNA upstream 325998 40851276 ~ 40851729 (-) True G1374328
TU1570148 lncRNA upstream 339147 40864425 ~ 40864710 (-) True G1374406
XM_021565860.2 mRNA downstream 42184 40459830 ~ 40480813 (-) True slc26a10
XM_021565856.2 mRNA downstream 79633 40436058 ~ 40443364 (-) False LOC110491958
XR_002468933.2 mRNA downstream 79633 40436058 ~ 40443364 (-) False LOC110491958
XM_036945855.1 mRNA downstream 283868 40238087 ~ 40239129 (-) False LOC118939474
XR_005036393.1 mRNA downstream 283868 40238087 ~ 40239129 (-) True LOC118939474
XM_036946877.1 mRNA upstream 2649 40527927 ~ 40614259 (-) False arhgef25a
XM_036946874.1 mRNA upstream 2649 40527927 ~ 40656366 (-) False arhgef25a
XM_036946875.1 mRNA upstream 2649 40527927 ~ 40656366 (-) False arhgef25a
XM_036946876.1 mRNA upstream 2649 40527927 ~ 40656367 (-) True arhgef25a
XM_021565866.2 mRNA upstream 200238 40725516 ~ 40766238 (-) False kmt2d
TU1569212 other downstream 438171 40082457 ~ 40084826 (-) True LOC110491948
TU1569124 other downstream 579969 39940222 ~ 39943028 (-) True G1373490
TU1569001 other downstream 802020 39719864 ~ 39720977 (-) True G1373378
TU1568834 other downstream 987698 39529924 ~ 39535299 (-) True G1373226
TU1568802 other downstream 1100145 39422150 ~ 39422852 (-) True G1373200
TU1570054 other upstream 327480 40852758 ~ 40854589 (-) True rps26
TU1570242 other upstream 501497 41026775 ~ 41029406 (-) True G1374491
TU1571388 other upstream 1138470 41663748 ~ 41664049 (-) True G1375495
TU1571475 other upstream 1329502 41854780 ~ 41855361 (-) True LOC110492013
TU1572034 other upstream 2028281 42553559 ~ 42569326 (-) True LOC110492054

Expression Profile