RNA id: TU1571447


Basic Information

Item Value
RNA id TU1571447
length 2775
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1375541
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41838426 ~ 41841200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaaagttaaaacagctgggcctaaaatagtataGAAGAGATTatacaaaagattttgctgtgactcttatgtgacTGTCAGAACTGTTAAGGCcccatagattgatgaggaattgaaaaactgtatggttgaaagagatggggcaaaaggagtggctaataagtctggctgcacatctgactggcggacttactgcaaattgagaaattatgtgacttaactcaacaaaaataagaagaaactgtataatgaagccaagatcaatgatataaaaacttgagtactttaaattaaattataggcagaaagacaaattcaactccatctttcatcgaatcagatggcttattcatcacaaaaccatttgatgttgccaattattttaatgattatttcattggcaaaTTTAGGCAGAAAATGCCAACAACAAACAGTAAGCaattgtattcatgcataaaaaacaaataatgaaagaaaagcattgcaagtttgaattgtgtaaagttagtgtgggagaggtggaataATGATTGTTGTCGATTagtaatgacaaacctcctggcattgacaacttagatggaaagctactgaggatggtagctgactctatagccactcctatctgtcattgtcctcaggcctggagggtagccaaagtaattccactacccactacccaagagtggtaaatcggcctttactggttctaaccgcagacctataagcttgctgccagctgtTGGAAAAAAATGATGTTTGACCAAATATGggtggaatgggtggccagtaataaactggtcctgaacataaCTAAAaataagagcattgtatttggtacaaatcactCCTTAAGTTCTTAACCTCAGCTGAATaaggtaatgaatggtgtggctgttgaacaaggtgaggagactaaattacttgccgttactttagattgtaaactgtcatggttaaaacatatagattcaatggttgtaaagatggggagaggtctggcaAAAAttaagagatgctctgcttttttgacaccacactccaaaaagcaagttctgcaggctctagttttgtctaatcttgattttTGTCTGCCGTGTGGttcagtgctgcaaggaaaggccaggttaagctgcagctgacccagaacagaacagaattgtaatcagagggctgatataaatactatacataccagtctctcttggcttagagttgaggagagactgactgcatcacttcttatttttataagaaacattagtGTGTTGAAAATTTCAAATTGCTTGCACAGTCAATTGACAcagagctctgacacacacacttatcaaacCAGACATGCCACTaagggtcttttcacagtccccgaatccagaacaaattcaagaaagcgtacaatattatatagagccctaattgcatggaacttccttccatctcatattgctttaataaacagcaaacctggtgtAAAAAAactgataaagcaacacctcacggcacaacacctctccccctatttgacctagatagtttgtgtgtatgcattaatatgtaggctacatgtgcctttAAAAAGTTTTTATGTAGTTCCGTCTTTGAgatgttcttgtctattgatgttctgtattatgtcattctgtgttatgtttcatgtggaccccaggaagagcagctgctgcttttgcaacagctaacggggatcctaataaaacaccaaataccaaatgacccaaaacacttccaggctgtgtaggggctattttaccaagaaggacagtgatgaagtgctgcatcagatgacttggcctccacaatcccccgaacTCAGCCAAATTGAGACGTTTGGGATGAGTCGaaccgtagagtgaaggaaaagtagccatgtgctcagcatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctagttgagagtgtgcaaagaatctcaaatataaaatacatttagatttgtttaacactttttgggggtTACTAGTTGAtttcatatgttatttcatagttttgatgtcttcactattattttacaatgtagaaaatagtaaaaataaagaaaaacccttgaacgagaaggcgttctaaaacttttgaccagtattGTATATGCACCAAAATGAGCTGTTTCTCTGAGTTGCCTTGTGAAAGTCTAACACTAAGAttgtattttataacttagcgAGTCATGTTGGCATAAAAACAAGcattcaaatgatgcccacctaaCTCCGATTGCAATTAGTAACGTACAGTTCTTGGATTGAGTAAACatcagtaattgtgtgatggcgaggatgcagggctgtgttccaaacaaaacaacaggtgtgctttccctagttcctcaacggcacagttCCTCAACGGCACCATCTAGGATGTTaaaaacataaatatacaccTTGGTTGAAGACTCTTCATTGAGTCATAAATGTGCATTGAAATTACATAGGAACTGtgcactttggagaggtgtgtggccacttgagCCATGTTTGAGGAGTTAGCGAGGAAACTTGGGTCAACTGAGTTCAAATCAGGAAAACCAGTAGCACGAAAATGGCTCATCTCAAATTTATATTGCAACAAATTCTTCAGAAGTAACCTGCTCCGTGCTAGGCTAACTCCGGGATAACTACATTTATCCTGAATTAAGTGTCTGAGCAgcgagttgaggaccaatgaagTCAGATTCCCTACTCTCGCAAAGATTGTCATCATTCCCTTCATTTGAGAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1571405 lncRNA downstream 105087 41729589 ~ 41733339 (-) True spryd3
TU1571372 lncRNA downstream 228069 41610117 ~ 41610357 (-) True G1375479
TU1571271 lncRNA downstream 344349 41489002 ~ 41494077 (-) True G1375396
TU1571270 lncRNA downstream 356140 41481877 ~ 41482286 (-) True G1375395
TU1570632 lncRNA downstream 381815 41456386 ~ 41456611 (-) True G1374850
TU1571471 lncRNA upstream 10836 41852036 ~ 41852546 (-) True G1375561
TU1571489 lncRNA upstream 23032 41864232 ~ 41952990 (-) True G1375576
TU1571496 lncRNA upstream 44809 41886009 ~ 41887418 (-) True G1375583
TU1571495 lncRNA upstream 50286 41891486 ~ 41895597 (-) True G1375582
TU1571526 lncRNA upstream 82183 41923383 ~ 41967093 (-) True G1375600
XM_021565955.2 mRNA downstream 23842 41731192 ~ 41814584 (-) False spryd3
XM_021565956.2 mRNA downstream 23842 41731192 ~ 41814584 (-) False spryd3
XM_021565957.2 mRNA downstream 23842 41731192 ~ 41814584 (-) False spryd3
XM_036946918.1 mRNA downstream 24073 41731192 ~ 41814353 (-) False spryd3
XM_036946919.1 mRNA downstream 27517 41731192 ~ 41810909 (-) False spryd3
XM_021565962.2 mRNA upstream 11427 41852627 ~ 41857489 (-) False LOC110492013
XM_021565967.2 mRNA upstream 21186 41862386 ~ 41879803 (-) False LOC110492014
XM_021565964.2 mRNA upstream 21186 41862386 ~ 41879804 (-) False LOC110492014
XM_021565965.2 mRNA upstream 21186 41862386 ~ 41879805 (-) False LOC110492014
XM_021565966.2 mRNA upstream 22563 41863763 ~ 41879805 (-) True LOC110492014
TU1571388 other downstream 174377 41663748 ~ 41664049 (-) True G1375495
TU1570242 other downstream 809020 41026775 ~ 41029406 (-) True G1374491
TU1570054 other downstream 983837 40852758 ~ 40854589 (-) True rps26
TU1569961 other downstream 1313148 40523059 ~ 40525278 (-) False G1374237
TU1571475 other upstream 13580 41854780 ~ 41855361 (-) True LOC110492013
TU1572034 other upstream 712359 42553559 ~ 42569326 (-) True LOC110492054
TU1572237 other upstream 931106 42772306 ~ 42773296 (-) True LOC110492059
TU1572712 other upstream 1277688 43118888 ~ 43124166 (-) True LOC110491060
TU1572781 other upstream 1318312 43159512 ~ 43170042 (-) True G1376748

Expression Profile