RNA id: TU1571489


Basic Information

Item Value
RNA id TU1571489
length 788
lncRNA type read_through
GC content 0.37
exon number 2
gene id G1375576
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41864232 ~ 41952990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACTTTATTTTGGCAACTTTTGCCCAGTTTGCGTCCAATATACACTTATTTCTTGCCAAAAGCTATAGTGTAGGCCTAACATTTGtttttatccagagtgatttacaggagcaattccgggttaagtgccttgctcaaggcacatcgacagatttttcacctagtatGCTCAGTGATTCCTTTCGGTTACGAGCCCAACGCTCTTCGCCGCTAGACTACCTGGCGCCCTATTGGAAAGTATGACCCATCTTACACTGAACAACAATGTATAGGCCTAAATGTGTGTTCATGATTTACAATTTACATGTAGCTTTATTTTGTTTAATTACCAACAATGTCAATGAGAACAACTAAATCTACACAATATCAACAACCAGATATCTTTGGTTAATCATTAGGATtggtaaacattcattcaaatatCTTAAGTGATCAATGTACACAATAAAAACGGACATAAAACATTATATAAACAACTTGATTGTACCCACATAAAATAATCCTGGTTTCCATCATTATTTGTGGAATGGCAATATACTACAGTAACAAACATTTACTTGTTTTAACATTTACCTATTTAACATTTAACACAAACCCCCTGAATTTTGATTATTGTTTTTTGATAACACAATGTCGTTGGTATCATCTACGATGATTCGAGGAGTAATGTTTGAAAGGCACAGTTTGGAGGAAAATATGTGATTAACTTCACACAATCCggcagagtagcctagtggttagagcgttggactagtaaccggaaggttgcgagttcaaacccccgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1571471 lncRNA downstream 11686 41852036 ~ 41852546 (-) True G1375561
TU1571447 lncRNA downstream 23032 41838426 ~ 41841200 (-) True G1375541
TU1571405 lncRNA downstream 130893 41729589 ~ 41733339 (-) True spryd3
TU1571372 lncRNA downstream 253875 41610117 ~ 41610357 (-) True G1375479
TU1571271 lncRNA downstream 370155 41489002 ~ 41494077 (-) True G1375396
TU1571558 lncRNA upstream 30794 41983784 ~ 41984090 (-) True G1375626
TU1571559 lncRNA upstream 31391 41984381 ~ 41984608 (-) True G1375627
TU1571562 lncRNA upstream 43935 41996925 ~ 41997216 (-) True G1375630
TU1571563 lncRNA upstream 44860 41997850 ~ 41998078 (-) True G1375631
TU1571564 lncRNA upstream 46103 41999093 ~ 41999321 (-) True G1375632
XM_021565962.2 mRNA downstream 6743 41852627 ~ 41857489 (-) False LOC110492013
XM_021565955.2 mRNA downstream 49648 41731192 ~ 41814584 (-) False spryd3
XM_021565956.2 mRNA downstream 49648 41731192 ~ 41814584 (-) False spryd3
XM_021565957.2 mRNA downstream 49648 41731192 ~ 41814584 (-) False spryd3
XM_036946918.1 mRNA downstream 49879 41731192 ~ 41814353 (-) False spryd3
XM_021565972.2 mRNA upstream 8949 41961939 ~ 42002388 (-) False LOC110492019
XM_021565973.2 mRNA upstream 8949 41961939 ~ 42014000 (-) True LOC110492019
NM_001160600.2 mRNA upstream 61401 42014391 ~ 42017835 (-) True LOC100301771
XR_005036645.1 mRNA upstream 67236 42020226 ~ 42020361 (-) True LOC118939612
XM_021565977.2 mRNA upstream 93159 42046149 ~ 42054226 (-) False LOC110492022
TU1571475 other downstream 8871 41854780 ~ 41855361 (-) True LOC110492013
TU1571388 other downstream 200183 41663748 ~ 41664049 (-) True G1375495
TU1570242 other downstream 834826 41026775 ~ 41029406 (-) True G1374491
TU1570054 other downstream 1009643 40852758 ~ 40854589 (-) True rps26
TU1569961 other downstream 1338954 40523059 ~ 40525278 (-) False G1374237
TU1572034 other upstream 600569 42553559 ~ 42569326 (-) True LOC110492054
TU1572237 other upstream 819316 42772306 ~ 42773296 (-) True LOC110492059
TU1572712 other upstream 1165898 43118888 ~ 43124166 (-) True LOC110491060
TU1572781 other upstream 1206522 43159512 ~ 43170042 (-) True G1376748
TU1572954 other upstream 1264819 43217809 ~ 43224383 (-) False LOC110492063

Expression Profile