RNA id: TU1573062


Basic Information

Item Value
RNA id TU1573062
length 1620
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G1376992
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43352881 ~ 43354500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAAACAACACATTCTGATTGCCAGCATTAAAGATGTATTACTTTCTATGTTCATAACGCTAATAACTTGCAAATGTGCAGGGCCCTAGCATTTTGGGGGCCCCCAAGAAATATTTTTACCCATCTCaaaggcaaaacattttagtggcccccctCTTTGTGGGCAGAGAGAAAAACGTGCTACTTTAAAGTTAATGTCCTGCAATTCGACACATTTTCCTTGGGGCgtggagaaaatgttgcagttttaaatcagacttcctgcaattctacacatttttccatggggcagaaagaacagtttgcagttttAAAACGAATTGAATGCAAAACTAATTgaatgcaattctactcattttgctaTGGGAAGGAGAGAAAATGTAGCAATTTTTATGTGAATTTCTTGCATGTTCTTATGATATCTGTGTGacagtgactaacaaaatcaatggggggccCCTTGGAGGTCAGGGCACGTGCCTTGGGTGTCCGGTCAGTAACTCGGCCATGATTACAACAagatttagatagctggctagactaacttacctagCAATCTATAAAATGTTAGCTTACATGGGCTAATTgattgactgtcagtgactgacataacaagaggaaaactaTTGAAATTGCACATTTTGTAATCCACTATGCTATCTCTAAACAGTaggttgagaccccgactgacttcgtaaaaaataaataaataaattccacaaaaaaacaaaacaagccCCAGTCAGCTCTGCTGTAGATAGATTCTCCACTAGGTGCTGCCCCAGCCTGTTGTGTTATTTTTCCTGATAGTGAACAGAACGTTGAAGATCTGAtgttgttttaaaggtacaaattcaacatattttatacaagggtttgtctatgttgaaatttggttactacgatgacataatcctgtggttgaaatgtcaccctcaaaacaacagttaattacttttttcaaatcccaTGCATTTTCCCAagtagattccacgtcacaatacattTCCTATCCCGTCCTCAGGCCTTGCTCTTAGCAGGAGGATCCTCCCGTATGTCCTTCAGATCCACCGTGGTCTCAGGGATGGGGTAGTCTCCTGCCACCAGGAGAGTCTGGTCCATCACATCTGTCACAATGAAACCATGCCCCACCACACCCAAACCCTGGGAGGAGAGCACCTCCACCTGGCCATGTCCCTGTCCCGCCCCAACCTGGGGAAAGCCGACCTGGCCATGAGTAAGGCCCACCTCTACCACACCTTGGCTCTGGGCTAAGCCTACCTCCAACTGGCCAGGCCCATGCCCCACCACAGCCTGGTTAAAGCCCACCACCACCTGCCCTTGGCttgacaccacctcctccaccaggGGCTGGATAACCACCCTGAGGATGTCACTGGCTCCTGGTACAGTTCCAGGTCCAGACACACTGAGTCCAGGTCCAAAGACAGGAAGAGGGACACTGGCTCCAGAGACAGGTGCCAGCCCCTCAGGTGTCCCCTTCTCAGTGGGTGGTGTTGGTGAGGGGCTAGTCTCATCCTCCTCCTGCGACCCCTCATCCTTTACTATCAGGTTCCGTAGCTTCCTCTCCCGCGGGTTGTAGTTCTCGGTGCGGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1573069 lncRNA downstream 395 43352257 ~ 43352486 (-) True G1376996
TU1573068 lncRNA downstream 857 43351286 ~ 43352024 (-) True G1376995
TU1573067 lncRNA downstream 3011 43349570 ~ 43349870 (-) True G1376994
TU1573064 lncRNA downstream 3928 43348157 ~ 43348953 (-) True G1376993
TU1573063 lncRNA downstream 4028 43348157 ~ 43348853 (-) False G1376993
TU1573085 lncRNA upstream 34907 43389407 ~ 43389711 (-) True G1377011
TU1573092 lncRNA upstream 39982 43394482 ~ 43394875 (-) True G1377018
TU1573100 lncRNA upstream 45075 43399575 ~ 43400203 (-) True G1377026
TU1573397 lncRNA upstream 224036 43578536 ~ 43579188 (-) True LOC110492071
TU1573434 lncRNA upstream 245601 43600101 ~ 43600450 (-) True G1377336
XM_036946964.1 mRNA downstream 5133 43340635 ~ 43347748 (-) True nol9
XM_036946966.1 mRNA downstream 5186 43340635 ~ 43347695 (-) False nol9
XM_036946963.1 mRNA downstream 5574 43340635 ~ 43347307 (-) False nol9
XM_036946962.1 mRNA downstream 5597 43340635 ~ 43347284 (-) False nol9
XM_036946961.1 mRNA downstream 5714 43340635 ~ 43347167 (-) False nol9
XM_036946968.1 mRNA upstream 1995 43356495 ~ 43366104 (-) False LOC110492067
XM_036946967.1 mRNA upstream 1995 43356495 ~ 43374695 (-) False LOC110492067
XM_036946969.1 mRNA upstream 1995 43356495 ~ 43375265 (-) True LOC110492067
XM_021566060.2 mRNA upstream 142682 43497182 ~ 43503930 (-) True LOC110492068
XM_021566061.2 mRNA upstream 180194 43534694 ~ 43561554 (-) False LOC110492069
TU1573055 other downstream 14326 43337499 ~ 43338555 (-) True G1376991
TU1572954 other downstream 128498 43217809 ~ 43224383 (-) False LOC110492063
TU1572781 other downstream 182839 43159512 ~ 43170042 (-) True G1376748
TU1572712 other downstream 228715 43118888 ~ 43124166 (-) True LOC110491060
TU1572237 other downstream 579585 42772306 ~ 42773296 (-) True LOC110492059
TU1573587 other upstream 337820 43692320 ~ 43692838 (-) True G1377482
TU1574744 other upstream 1198514 44553014 ~ 44553547 (-) True G1378530
TU1574785 other upstream 1563513 44918013 ~ 44964482 (-) True plxna2
TU1576625 other upstream 1961447 45315947 ~ 45320378 (-) True slc48a1a
TU1576791 other upstream 2263717 45618217 ~ 45627698 (-) True LOC110492109

Expression Profile