RNA id: TU1574770


Basic Information

Item Value
RNA id TU1574770
length 250
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1378556
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 44600273 ~ 44600522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTTCCTTGCCAGCTGGCTACAGTGCATAATTACCCACCGCAAATCCGcatgaagactagggttgagttactgtaggttttggggaagctccatatacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagcatgtagaggtctgtaatttttatcgtaggtacacttcaactgtgagagacggaatctaaaaaaaatccagaaaatcacattgtatgattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1574737 lncRNA downstream 55544 44544403 ~ 44544729 (-) True G1378523
TU1574657 lncRNA downstream 59556 44538353 ~ 44540717 (-) False LOC110492088
TU1574658 lncRNA downstream 59556 44538353 ~ 44540717 (-) True LOC110492088
TU1574676 lncRNA downstream 63703 44535620 ~ 44536570 (-) True G1378466
TU1574679 lncRNA downstream 64771 44534374 ~ 44535502 (-) True G1378469
TU1574777 lncRNA upstream 12654 44613176 ~ 44613385 (-) True G1378563
TU1574780 lncRNA upstream 17525 44618047 ~ 44618262 (-) True G1378566
TU1574782 lncRNA upstream 18548 44619070 ~ 44619293 (-) True G1378568
TU1574838 lncRNA upstream 128371 44728893 ~ 44729828 (-) True G1378624
TU1574847 lncRNA upstream 139976 44740498 ~ 44741330 (-) True G1378631
XM_021564414.2 mRNA downstream 4060 44560201 ~ 44596213 (-) False cd34a
NM_001281360.1 mRNA downstream 4236 44562221 ~ 44596037 (-) True cd34a
XR_002468948.2 mRNA downstream 59516 44538351 ~ 44540757 (-) False LOC110492088
XR_005036532.1 mRNA downstream 105005 44489262 ~ 44495268 (-) True LOC118939541
XR_005036531.1 mRNA downstream 134532 44461373 ~ 44465741 (-) True LOC110492087
XM_036947019.1 mRNA upstream 21217 44621739 ~ 44964691 (-) False plxna2
XM_021566099.2 mRNA upstream 703198 45303720 ~ 45306828 (-) False LOC110492092
XM_021566098.2 mRNA upstream 703198 45303720 ~ 45307528 (-) False LOC110492092
XM_021566100.2 mRNA upstream 703198 45303720 ~ 45307528 (-) False LOC110492092
XM_021566102.2 mRNA upstream 703198 45303720 ~ 45307534 (-) False LOC110492092
TU1574744 other downstream 46726 44553014 ~ 44553547 (-) True G1378530
TU1573587 other downstream 907435 43692320 ~ 43692838 (-) True G1377482
TU1573055 other downstream 1261718 43337499 ~ 43338555 (-) True G1376991
TU1572954 other downstream 1375890 43217809 ~ 43224383 (-) False LOC110492063
TU1572781 other downstream 1430231 43159512 ~ 43170042 (-) True G1376748
TU1574785 other upstream 317491 44918013 ~ 44964482 (-) True plxna2
TU1576625 other upstream 715425 45315947 ~ 45320378 (-) True slc48a1a
TU1576791 other upstream 1017695 45618217 ~ 45627698 (-) True LOC110492109
TU1576851 other upstream 1104588 45705110 ~ 45705453 (-) False G1380431
TU1577246 other upstream 1816038 46416560 ~ 46419878 (-) False LOC110492748

Expression Profile