RNA id: TU1579359


Basic Information

Item Value
RNA id TU1579359
length 1741
RNA type TUCP
GC content 0.42
exon number 2
gene id G1382721
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47943379 ~ 47946222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcactttttccacatccACATTTCCACATattttttcctcaatctacacaataccccataatgacaaagtgaaaacaggtttgtagaaattgctatgagacccgaaattgagcttaggtgcatcttgtttccattgatcatccttgagatgtttctacaacttgattgagtccacctgtggtaaattcaattgatggggcatgacttggaaaggcacacctgtctatataaggtcccacagttgacagtgcatggcagagcaagaaccaagccatgaggtcgaaggaactgtccgcagaactccgagacaggattttgtcgaggcacagatctgaggaagggaaccaaaacatgtctgcagcattgaaggtccccagaacacaatggcctccatcattcttaaatggaataagttcgGAAccaccgcccggccaaactgagcaattgggggagaagaaccttggtcagggaggtgaccaagtacccgatggtcactctgacagagctccaaaattcctctgtggagatgggagaaccttccagatggacaaccatctctgcagcactccagcaaatcaggcctatatggtagagtggccagacggaagccactcctcagtaaaaagacACATGTAgtttgtagtttgccaaaaggcacctaaaggactctaatcatgagaaacaagattatctggtcttaTGAAATCAAGATTAAACTGTTTCGCCTGAATGCCaaccgtcacgtctggaggaaaccaggcaccactcaCCACCTtaccaataccatccctacggtataGCATGGTGgaagcagcatcatgctgtggggatgttaagTGGcagggatcgagggaaagatgaaaggagcaaagcacagagagatccttgatcaaAACCTAAGCAACCCTAaaacacacagccaatacaacgcaggagtggcttcgggacacgtctctgaatgtccttgagtggcccagccagggcccggacttgaacctgatcgaacatctctggagagacctgaaaatagctgtgcagcgacgctcctcatctaacctgacagagcttgagaggatctgcagagaagaatgggagaaactccccaaatacagatgtgccaagcttgtagtgtcatacccaagaagactcgaggctgtaattgctgccaaaggtgcttcgagaaagtactgagtaaagtgtctgaatactaatgtaaatgtgatgtttttttattttaatacatttgcaaaaaaaaaacaaaaaatctgtttttgctttttcattatggggtattgtgtatagattgcctacacataatatcccataatgttaaagtggaattctttttttatttcacaaaTTAATACAAAGCTGAAATGTCCTGAGTAAATAAATATTAAACCCCTttgtcatggcaagcctaaatatgttcaggagtaaaaatctgattaaacagtcacataaataagttgcatggacttattCTGTATGTAATAAGTGTTCAACATGAATTTTGAATGACTCGCTCATCActataccacacacatacaaatatttGTAAGGGccttcagttgagcagtgaatttcaaatacagattcaaccacaaagaccagggtattccaatgccttgcaaatcagggcacctattggtagattgtaTTGGTAAAtataagcagacattgaatatccctttgagcatggtaaagttattaattacactttggacggtgtatcaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1579362 lncRNA downstream 18459 47924684 ~ 47924920 (-) True G1382724
TU1579358 lncRNA downstream 23772 47918216 ~ 47919607 (-) True thap3
TU1579166 lncRNA downstream 336954 47605268 ~ 47606425 (-) True G1382535
TU1579104 lncRNA downstream 451812 47491060 ~ 47491567 (-) True G1382475
TU1579078 lncRNA downstream 502839 47439450 ~ 47440540 (-) True G1382454
TU1579382 lncRNA upstream 27926 47974148 ~ 47974435 (-) True G1382743
TU1579384 lncRNA upstream 35319 47981541 ~ 47981742 (-) True G1382745
TU1579408 lncRNA upstream 75891 48022113 ~ 48023047 (-) True G1382767
TU1579434 lncRNA upstream 165762 48111984 ~ 48112221 (-) True G1382792
TU1579435 lncRNA upstream 166306 48112528 ~ 48112781 (-) True G1382793
XM_036945779.1 mRNA downstream 15901 47918157 ~ 47927478 (-) False thap3
XM_036947088.1 mRNA downstream 35105 47409235 ~ 47908274 (-) False LOC110492148
XM_036947094.1 mRNA downstream 35105 47409235 ~ 47908274 (-) False LOC110492148
XM_036947087.1 mRNA downstream 35106 47409235 ~ 47908273 (-) False LOC110492148
XM_036947092.1 mRNA downstream 35106 47409235 ~ 47908273 (-) False LOC110492148
XM_021566207.2 mRNA upstream 7196 47953418 ~ 47956955 (-) False LOC110492153
XM_021566206.2 mRNA upstream 8125 47954347 ~ 47956955 (-) True LOC110492153
XM_036947101.1 mRNA upstream 85680 48031902 ~ 48035116 (-) False LOC118939549
XM_036947102.1 mRNA upstream 85680 48031902 ~ 48036060 (-) True LOC118939549
LOC118939550 mRNA upstream 95811 48042033 ~ 48074973 (-) True LOC118939550
TU1579060 other downstream 494514 47425312 ~ 47448865 (-) True LOC110492148
TU1577598 other downstream 853849 47087169 ~ 47089530 (-) True LOC110492137
TU1577528 other downstream 1064233 46878611 ~ 46879146 (-) True G1381036
TU1577381 other downstream 1181913 46759287 ~ 46761466 (-) True LOC110491077
TU1577402 other downstream 1274785 46657467 ~ 46668594 (-) True LOC110492767
TU1579549 other upstream 335991 48282213 ~ 48312958 (-) True G1382894
TU1580193 other upstream 1238086 49184308 ~ 49196326 (-) True LOC110492187
TU1581430 other upstream 1656896 49603118 ~ 49719539 (-) True LOC110491086
TU1581769 other upstream 2118599 50064821 ~ 50065817 (-) True G1384875
TU1582569 other upstream 3109409 51055631 ~ 51056061 (-) True G1385645

Expression Profile