RNA id: TU1581927


Basic Information

Item Value
RNA id TU1581927
length 666
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1385025
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 50313736 ~ 50314401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATTTAATTAAGAGAAAAACAGTACAAAATAGACATCCTTTCTATACATATATAGGAAATATGTAGGAAAAAATTAACACAAGGTAAATAAAAAGTATGAAAaaaagactgttattcttacctCCAGTTAGTGAATTCTACCAATACTTGACTCAAGGCACATGTGTGATCTCTTTTGGTCGTGAGTATCTATTTACAGTGACTTTAAGAAAGAGAGCATAAAAATGACAATATTAAAGGAAATCAAGAGGAGTGGCCCACTTGTCACTAAGACAATAAGAGTGTTGCCCATAGGCCCCTGGAAGTCTTTACAGGAGAGGTCATGTACAGTATCCAACACACTTTGTCTAACATTACTTCTTAGACAACAGATACCCACTGGTGTACTACGAGGCAGAGAGCACAGGCACCGTTCTACGAGAATATGAATAATGGTGGTTACTTCTATTTCTTTTTATACAAGTCTTTGAGGGGATCTTACAGGCAAACATTGCCCAGAGTCTTGAAAACAACCACCCCAAAACAAATAGTTAGTACAAACAATAATGAATATTGAAAACTGGCAATGGcctcatacacacatatacagattTGGATTTTATTTGACCCAGTTTGCTACAGTACAAAAGTAGTCCTGCAGCAAACAGGAAAAGTGAATTATGtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1581908 lncRNA downstream 71379 50241871 ~ 50242357 (-) True G1385009
TU1581902 lncRNA downstream 82098 50231434 ~ 50231638 (-) True G1385003
TU1581896 lncRNA downstream 91832 50221675 ~ 50221904 (-) True G1384997
TU1581893 lncRNA downstream 97398 50216109 ~ 50216338 (-) True G1384994
TU1581831 lncRNA downstream 97905 50211501 ~ 50215831 (-) False G1384933
TU1581976 lncRNA upstream 2396 50316797 ~ 50317259 (-) True G1385066
TU1581984 lncRNA upstream 14578 50328979 ~ 50329358 (-) True G1385072
TU1582037 lncRNA upstream 107081 50421482 ~ 50421767 (-) True G1385123
TU1582039 lncRNA upstream 109714 50424115 ~ 50424335 (-) True G1385125
TU1582047 lncRNA upstream 122062 50436463 ~ 50436711 (-) True G1385133
XM_036947162.1 mRNA downstream 342443 49950665 ~ 49971293 (-) True itchb
XM_036947163.1 mRNA downstream 342444 49950665 ~ 49971292 (-) False itchb
XM_036947161.1 mRNA downstream 342445 49950665 ~ 49971291 (-) False itchb
XM_021566302.2 mRNA downstream 374848 49933079 ~ 49938888 (-) True e2f1
LOC110491088 mRNA downstream 379986 49927464 ~ 49933750 (-) True LOC110491088
XM_021566309.2 mRNA upstream 515 50314916 ~ 50318773 (-) True LOC110492208
XM_021566314.2 mRNA upstream 707055 51021456 ~ 51031919 (-) False mad2l2
LOC110491089 mRNA upstream 726722 51041123 ~ 51043794 (-) False LOC110491089
LOC110491090 mRNA upstream 762377 51076778 ~ 51077359 (-) True LOC110491090
XM_021566315.2 mRNA upstream 787382 51101783 ~ 51103933 (-) True LOC110492214
TU1581769 other downstream 247919 50064821 ~ 50065817 (-) True G1384875
TU1581430 other downstream 594197 49603118 ~ 49719539 (-) True LOC110491086
TU1580193 other downstream 1117410 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 2000778 48282213 ~ 48312958 (-) True G1382894
TU1579359 other downstream 2367514 47943379 ~ 47946222 (-) True G1382721
TU1582569 other upstream 741230 51055631 ~ 51056061 (-) True G1385645
TU1582822 other upstream 776244 51090645 ~ 51128648 (-) True G1385888
TU1582837 other upstream 799002 51113403 ~ 51115065 (-) True dffb
TU1583828 other upstream 1668733 51983134 ~ 51989995 (-) True LOC110492226
TU1585179 other upstream 2104475 52418876 ~ 52428759 (-) True spen

Expression Profile