RNA id: TU1580900


Basic Information

Item Value
RNA id TU1580900
length 1647
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1384102
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 50391701 ~ 50418540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttctttatttttactattctctacattgtaggataatagtgaagacatcaaaactattgtAACGATCTTCATCTGATGGAACAGGAAAGATTGGATCAAAACagagcgtggtaagtgtccatgttaatttaatATCACTGAACACGAAATACAAAATAACCAAGTGAAACAACGGAAattgaaacagtcctgaaaggtgacaaaacacaaacagagacaggaacaatacccacgaaacactcaaagaatatgactgcctaaatatggttcccaatcagagacaatgataaacacctgcctctgattgagaaccactccaggcaaccatagacttacctagactacttcactaaaccacaatcccataacctacaaaaaaaacctagacaaaacacaccacataaatacccatgtcacaccctggcctgaccaaaataaataaagaaaacacaaaatactaaggccagggcgtgacacacacctcctcctccatgcttcacggtgctTCCCATGCTTCCCAgcaatcccagttcgacaataaatgtttgttttgttcgataaagtccatcatttatgtccaaatacctcctttttgttcacgcatttagttcacaaatccaaattcacttAGTCCAGaagaaaagtcaaaaaagttatattacagtttgtagaaacatgtcaaacgatctATAgtatcaatctttaggatgtttttaacataaatcttcaataatgtttcaaccggacaattcctttgtctttagaaattaaacagtatcaaatcaaatcaaatcaaatttgtatttgtcacatacatgtgCGCGCTCGCTCTCACGGCCATGCGCATgacttagctcatggcattctgccagacctctttgtcaaacagctcttattcgctcccccttcacagtatacgcctgaaacaaggttctaaagactgttgacatctattggaagccttaggaagtgcaatcggaccaaatttacactgtatcttggataggcaaagacttgaaaacctacaaacctcagatttcccatatttttgccatatgagttctgttatactcattcaaacagttttagaaacttcagagtgttttctatccaaatctactaataatatgcatatcttagcttctgggcctgagaagcaggcagtttactctgggcaccttattcatccaagctactcaatactgccccccagccataagaagctaacacttttttggttactacatgattccatatgtgttttttttatagtgttgatgtcttcactattattctaaaatgtagaaaatagtaaagaataaagaaaacccttgaatgagtaggtgtttccaaacatttgactcgtactgtatacatactttttaaaacatattttcagGCAATCCTGACCATTAATTTATCAGGCTTATATTATATTACTTCCTTGATGTCATTAATTAAATAATATCCCTATGCTAATGTATGTCTGATTCTTGGTTTGGCTATAGCTATAGCTGTACTTGTGACTATATCCATCCACTCACTTTATTTTCTTTGTAAACATAGAAAGAAACACATTTCTTTATAGTAATTCATCCACTTTTCCCTTTTATGCATAAAGAACGCATATAATACCATGaaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1580941 lncRNA upstream 50790 50360755 ~ 50364355 (+) True G1384110
TU1580889 lncRNA upstream 78212 50336635 ~ 50336933 (+) True G1384093
TU1580888 lncRNA upstream 79062 50335854 ~ 50336083 (+) True G1384092
TU1580882 lncRNA upstream 85467 50329355 ~ 50329678 (+) True G1384086
TU1580849 lncRNA upstream 100782 50313797 ~ 50314363 (+) True G1384058
TU1580971 lncRNA downstream 2957 50421497 ~ 50421979 (+) True G1384140
TU1580972 lncRNA downstream 4057 50422597 ~ 50422890 (+) True G1384141
TU1580978 lncRNA downstream 11971 50430511 ~ 50430727 (+) True G1384147
TU1580992 lncRNA downstream 26608 50445148 ~ 50445436 (+) True G1384161
TU1580993 lncRNA downstream 27644 50446184 ~ 50446439 (+) True G1384162
XM_021566310.2 mRNA upstream 88324 50324145 ~ 50326821 (+) True LOC110492209
XM_036947170.1 mRNA upstream 104100 50241978 ~ 50311045 (+) False LOC110492207
XM_036947177.1 mRNA downstream 71697 50490237 ~ 50793128 (+) False LOC110492210
XM_036947176.1 mRNA downstream 71698 50490238 ~ 50796195 (+) False LOC110492210
XR_002469095.2 mRNA downstream 520184 50938724 ~ 50939714 (+) True LOC110492909
XR_005036540.1 mRNA downstream 669561 51088101 ~ 51094492 (+) True LOC118939554
XM_021566318.2 mRNA downstream 691568 51110108 ~ 51113467 (+) True c16h1orf174
TU1579025 other upstream 1165270 49245582 ~ 49249875 (+) False LOC110492182
TU1578917 other upstream 1381007 49024931 ~ 49034138 (+) False LOC110492179
TU1578916 other upstream 1381007 49025211 ~ 49034138 (+) True LOC110492179
TU1578405 other upstream 2102329 48282210 ~ 48312816 (+) True LOC110492164
TU1576401 other upstream 3385953 47026122 ~ 47029192 (+) True LOC110491080
TU1581021 other downstream 71758 50490298 ~ 50529084 (+) True LOC110492210
TU1581081 other downstream 154152 50572692 ~ 50573050 (+) True G1384247
TU1582637 other downstream 862863 51281403 ~ 51289259 (+) True nphp4
TU1583194 other downstream 1107473 51526013 ~ 51526813 (+) True G1386227
TU1583221 other downstream 1141613 51560153 ~ 51560878 (+) True G1386254

Expression Profile