RNA id: TU1582822


Basic Information

Item Value
RNA id TU1582822
length 690
RNA type TUCP
GC content 0.49
exon number 2
gene id G1385888
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51090645 ~ 51128648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccaaactgcctctggaagcaacgtcagcacaagaactgtttgtcggaagcttcatgaaatgggtttccatggccgaacagcagcacacaagcctaagatcaccatgcgcaatgccaagcgtcagctggagtggtgtaaagctcgccgccattggactctggagaagtggaaacgttctctggagtgatgaatcacgcttcaccatctggcagtccgacagggcgaatctgggtttggcagatgccaggagaacgctaccagccccaatgcatagtgccaactgtacagttaggtggaggatgaataatcgtctggggatgtttttcatggttcaggcttggccccttagttccagtgaagggaaatcttaacgctacaacatacaatgacattctagaaaaTTCTCTGCTTCCAACTtcatggcaacagtttggggaaggccctttcctgttttagcatgacaatgccctcgtgcCCAAAGcaaggtctatacagaaatggattgtcgagattggtgtggaagaacttaactggcctgcacagagctctgaccttgatgcaggccagtcaagttcctctgtgcaggccagtgaaaTTCAAGGTAATTATAGCAGCaatggggggaccaactctatattaatacccatgattttggaatgagatgtttgacgagcaggtgtccacatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1582589 lncRNA downstream 18407 51071866 ~ 51072238 (-) True G1385665
TU1582558 lncRNA downstream 42265 51048066 ~ 51048380 (-) True G1385634
TU1582553 lncRNA downstream 46981 51043445 ~ 51043664 (-) True LOC110491089
TU1582535 lncRNA downstream 58742 51029981 ~ 51031903 (-) True mad2l2
TU1582514 lncRNA downstream 75230 51015073 ~ 51015415 (-) True G1385592
TU1582983 lncRNA upstream 176846 51305494 ~ 51340532 (-) True G1386030
TU1583018 lncRNA upstream 232717 51361365 ~ 51362050 (-) True G1386059
TU1583019 lncRNA upstream 248064 51376712 ~ 51384868 (-) True G1386060
TU1583024 lncRNA upstream 257578 51386226 ~ 51386542 (-) True G1386064
TU1583027 lncRNA upstream 261628 51390276 ~ 51390551 (-) True G1386067
LOC110491090 mRNA downstream 13286 51076778 ~ 51077359 (-) True LOC110491090
LOC110491089 mRNA downstream 46851 51041123 ~ 51043794 (-) False LOC110491089
XM_021566314.2 mRNA downstream 58726 51021456 ~ 51031919 (-) False mad2l2
XM_021566309.2 mRNA downstream 771872 50314916 ~ 50318773 (-) True LOC110492208
XM_036947162.1 mRNA downstream 1119352 49950665 ~ 49971293 (-) True itchb
XM_021566322.2 mRNA upstream 393701 51522349 ~ 51603970 (-) True LOC110492220
XM_036945783.1 mRNA upstream 562235 51690883 ~ 51717957 (-) True LOC110491091
XM_021566323.2 mRNA upstream 593322 51721970 ~ 51735560 (-) False LOC110492221
XM_036947183.1 mRNA upstream 593322 51721970 ~ 51738292 (-) True LOC110492221
XM_021566355.2 mRNA upstream 851966 51980614 ~ 51990025 (-) False LOC110492226
TU1582569 other downstream 34584 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 1024828 50064821 ~ 50065817 (-) True G1384875
TU1581430 other downstream 1371106 49603118 ~ 49719539 (-) True LOC110491086
TU1580193 other downstream 1894319 49184308 ~ 49196326 (-) True LOC110492187
TU1579549 other downstream 2777687 48282213 ~ 48312958 (-) True G1382894
TU1583828 other upstream 854486 51983134 ~ 51989995 (-) True LOC110492226
TU1585179 other upstream 1290228 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 1443062 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 1903284 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 2601689 53730337 ~ 53732915 (-) True LOC110492299

Expression Profile