RNA id: TU1583284



Basic Information


Item Value
RNA id TU1583284
length 273
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1386315
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51558641 ~ 51558913 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caaaatgaaaagctgacatTTCTTGAATGtgaatcaataagtattcaacgaTGTTGTTATGGCacgtctaaataagttcaggagtaaaaattaatcactctgtgtgcaataatagtgtttaacatgatttctatACCCCACACATCTATGTACCCAACATATACACTGATCTGTAAGGTTACTCAAttgagcagtacatttcaaacacagatttaaccacaaaaaCCAGGGAGGTTCGCAAGGAAAGCCACCTATCGATtcattgggggaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1583283 lncRNA downstream 2285 51555957 ~ 51556356 (-) True G1386314
TU1583277 lncRNA downstream 8381 51550056 ~ 51550260 (-) True G1386308
TU1583276 lncRNA downstream 8996 51549295 ~ 51549645 (-) True G1386307
TU1583272 lncRNA downstream 14702 51543640 ~ 51543939 (-) True G1386304
TU1583269 lncRNA downstream 17161 51541226 ~ 51541480 (-) True G1386301
TU1583296 lncRNA upstream 22122 51581035 ~ 51581254 (-) True G1386327
TU1583297 lncRNA upstream 23204 51582117 ~ 51582331 (-) True G1386328
TU1583298 lncRNA upstream 24287 51583200 ~ 51583470 (-) True G1386329
TU1583305 lncRNA upstream 35616 51594529 ~ 51594740 (-) True G1386336
TU1583337 lncRNA upstream 66404 51625317 ~ 51625782 (-) True G1386368
XM_021566316.2 mRNA downstream 440791 51113591 ~ 51117850 (-) False dffb
XM_021566317.2 mRNA downstream 440798 51113591 ~ 51117843 (-) False dffb
XM_021566315.2 mRNA downstream 454708 51101783 ~ 51103933 (-) True LOC110492214
LOC110491090 mRNA downstream 481282 51076778 ~ 51077359 (-) True LOC110491090
LOC110491089 mRNA downstream 514847 51041123 ~ 51043794 (-) False LOC110491089
XM_036945783.1 mRNA upstream 131970 51690883 ~ 51717957 (-) True LOC110491091
XM_021566323.2 mRNA upstream 163057 51721970 ~ 51735560 (-) False LOC110492221
XM_036947183.1 mRNA upstream 163057 51721970 ~ 51738292 (-) True LOC110492221
XM_021566355.2 mRNA upstream 421701 51980614 ~ 51990025 (-) False LOC110492226
XM_021566356.2 mRNA upstream 421701 51980614 ~ 51990025 (-) False LOC110492226
TU1582822 other downstream 429993 51090645 ~ 51128648 (-) True G1385888
TU1582837 other downstream 443576 51113403 ~ 51115065 (-) True dffb
TU1582569 other downstream 502580 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 1492824 50064821 ~ 50065817 (-) True G1384875
TU1581430 other downstream 1839102 49603118 ~ 49719539 (-) True LOC110491086
TU1583828 other upstream 424221 51983134 ~ 51989995 (-) True LOC110492226
TU1585179 other upstream 859963 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 1012797 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 1473019 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 2171424 53730337 ~ 53732915 (-) True LOC110492299

Expression Profile