RNA id: TU1583689


Basic Information

Item Value
RNA id TU1583689
length 262
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1386681
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51697205 ~ 51697466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcacctgcagaaccactcctttattgggggtgtcttgctaattgcctataatttccacctgttgtctattccatttgcacaacagcatgtgacatttattgtcaatcagtgttgcttcctaagtggacagtttgatttcacaaaagtgtgattgacttggagttacattgtgttgtttaagtgttccctttatttttttgagcagtgtatgatgTCACAGCTCTGGTGTCATTCGATCGCTCAAATATAACTACATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1583682 lncRNA downstream 7464 51689406 ~ 51689741 (-) True G1386674
TU1583677 lncRNA downstream 12420 51684569 ~ 51684785 (-) True G1386669
TU1583676 lncRNA downstream 13282 51683717 ~ 51683923 (-) True G1386668
TU1583675 lncRNA downstream 13639 51683363 ~ 51683566 (-) True G1386667
TU1583658 lncRNA downstream 35928 51661062 ~ 51661277 (-) True G1386650
TU1583735 lncRNA upstream 152349 51849815 ~ 51852787 (-) True G1386716
TU1583732 lncRNA upstream 162863 51860329 ~ 51862186 (-) True G1386713
TU1583801 lncRNA upstream 173225 51870691 ~ 51871007 (-) True G1386781
TU1583802 lncRNA upstream 174424 51871890 ~ 51872097 (-) True G1386782
TU1583804 lncRNA upstream 176495 51873961 ~ 51874371 (-) True G1386784
XM_021566322.2 mRNA downstream 93235 51522349 ~ 51603970 (-) True LOC110492220
XM_021566316.2 mRNA downstream 579355 51113591 ~ 51117850 (-) False dffb
XM_021566317.2 mRNA downstream 579362 51113591 ~ 51117843 (-) False dffb
XM_021566315.2 mRNA downstream 593272 51101783 ~ 51103933 (-) True LOC110492214
LOC110491090 mRNA downstream 619846 51076778 ~ 51077359 (-) True LOC110491090
XM_021566323.2 mRNA upstream 24504 51721970 ~ 51735560 (-) False LOC110492221
XM_036947183.1 mRNA upstream 24504 51721970 ~ 51738292 (-) True LOC110492221
XM_021566355.2 mRNA upstream 283148 51980614 ~ 51990025 (-) False LOC110492226
XM_021566356.2 mRNA upstream 283148 51980614 ~ 51990025 (-) False LOC110492226
XM_021566367.2 mRNA upstream 301092 51998558 ~ 52063138 (-) False LOC110492229
TU1582822 other downstream 568557 51090645 ~ 51128648 (-) True G1385888
TU1582837 other downstream 582140 51113403 ~ 51115065 (-) True dffb
TU1582569 other downstream 641144 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 1631388 50064821 ~ 50065817 (-) True G1384875
TU1581430 other downstream 1977666 49603118 ~ 49719539 (-) True LOC110491086
TU1583828 other upstream 285668 51983134 ~ 51989995 (-) True LOC110492226
TU1585179 other upstream 721410 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 874244 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 1334466 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 2032871 53730337 ~ 53732915 (-) True LOC110492299

Expression Profile