RNA id: TU1583781


Basic Information

Item Value
RNA id TU1583781
length 2518
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G1386762
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51913152 ~ 51915899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACAATTCATTGGCTCTCTGTTTATTAAAGTGCTCTGGAAAAATAGCAGAATTCATTTCAGAAACAATATTTACAAAACGTACCATTACAAAAGAGTTATAGGACCACAGAGATGTAGAAGTCTACAAAACAAAGTGAGAAGCACTTGAAGATTAGACTTGACATAGAAAGCATCATAGGAATAAGGTCCTTCATCCAAAAGGAACCATAAAGGTATCACATTGGGGAAGCTTAAATGATTTCAGTGTAAAAATCTTGGTTCTTTCGTTATCTATCGGCTGGTTTGTAAGGCAAAGTCCACGACTGCCATTACTTCAGTAGAGGATACACTGTACTAACTGAAAAACGAGAAGTATAGTAGCAAATAAAGACAAACACATTTCTTTCAAATGTTTGCTCTTATAAAACGATATCCCCTAACAACTGAAGGGACTGTCATTCAATCTTGATGAACAGACTCCACTCCAAACTCAATTGTTAGAGGAAATTAATATTTTTCTACTTTAAGAGAATAGATTGTGAAACTAACCTGCACTGAAGCCTTAAGACGATATCAATATAGAAAAAGTACCAAAGAGATTTATATTTCAGCAATGATACAGTGCAAACTGGTTAATAAACATATAGGCTATATAAAAAAACATCTTATTGAAGCATCATAAATGAGAAAATAAAGGAATGATTGATTGACTAGTTAAGAGTGAGCTGGTCCTCTTGCAGAGTGTGGTGCACTGGTATCCAGAGCTTAAACCACTTTTTCCATTGGGGAAAACGTCACTTGCCCATCGAACAAGTACATTTAACACGCAAATTCATAATGTATTAAATTCATATAAACTATAATTAGTTGTCTCTAAAATGAACATCTATCTGATAgttaaatattatattataactCCTTGATAAAAATGTTATATGAAAAACATGTCAATTGTATCACATCGTATCTTTTACCACCCCCCGAAAAGCCAATTAGGAAAGAAGAAAAACCCTCAAACCATCATATCATATTTTATTATATTATCAAGTCGATATTTCAGAGCTGGTCCGTCAGAGGGGGTGAGAATTATTCTCATTTGGTACGGTAGGCCAACACCTACAACTGGTATAGGAATGCCTTCAATCTCTCATCATACTGCAATAAGTCTGACACCATAGGTCAGGGGCggacaaccctgTAGAATCACAACTCCCTTCGTTGTGAACAACGGAATTACCTTGAAATGAATGACATAGTAGATCTATGGCTTTACAGTGAAAGGCAATGAATACAATCAAGTTGTGGTCTCATCTCACCTGGAATGGACTTTAGTTCTTAACGTTTGTTCCATACTGTTCTGGCATTTTACATGGTCAGACACTACAACGTTGTTGTAGACAGAGTAGTTAACGTAAGATGAACATGTACTGAAGCTTCTCAAATGGCTTGCACTGCAGACAAACTGCAGAGAGAGGAATACTGAAGATATGATTATGCTACACTTGCACTAAGCTGTAAATACGATTAAGAAAATTAAAGTTATGTAAACCTTAATAAGCAATTATCTATGTAATAGTTATGAGTTGAAGGCACAATCTACACATTTAGTTCATTATTGCAGAGTAGACGCAATTATTCTGCTTTTCCTgaagtagtaataataataataataatacctaaTTTTCTGTTAGGGATTGtataaaaaacaaatacatttaattcCTTATCTCCATTATCTCCAAGAACATTGGTTCTTGATGAACAACCCCACTGACAATAGTCACGACATCTGTTTTCTATGTTGAGGATCTTGGCAGCCCCTTAGCATTCACGTCGCTCAAGCTAAACAAAACAACGTTCATGGTTTAAGAGGAGCCGAGGTTTGTCCCTGATAGCCTGTAAGACGCCACGAAACAATAGACAAAGTGCTAAAACAGACCACATTATATCTCATGGGCCAACTTTAACAATCATTATCAGGAGGATTGATATCATGGTTTTGATCCCTAGCTCAGTATTACTTTGTCTGACTGAAAACAATCCAGGTTTAAGTTAACCCGTGAGACTATCTGTTGGCATAAAAAGGCAATTTCGACAATCTTTTTCAAAGGGCGTGAAATTCTTAACAGTAAGGGATGATTCATTCTAGAACCAAAACAAAATAATGCAAACCATCTCTGGAGGATATTAGTTGCAAATTTACCCGATGGAATCCAACTGAAGTCAATGGGTGCATTCCAGATATAGGATATCAAAATATCATGTTGACGTCGTATCCTAGTATGTTAAAACACTTGTCCAGGTATTATAAAGATCGGATTTCATCAGTGAACTGTGCAGAATCTGTATATCTGGAACGCACCCAAAGGGTCAACATAGCGTCACCAGGAGGCGAGTTTGTTGGCCTCAGAATTCTTCCTCCTCTGAGCTGAGGTAGTTCTGCTTCTTCCTCACATTCCAGTGTAAACATTGGCTCAGGCTCTCAAACCAGTCGTTCACGGGGTCCCGGAAacagatggagggaacagggaagCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1583804 lncRNA downstream 38781 51873961 ~ 51874371 (-) True G1386784
TU1583802 lncRNA downstream 41055 51871890 ~ 51872097 (-) True G1386782
TU1583801 lncRNA downstream 42145 51870691 ~ 51871007 (-) True G1386781
TU1583732 lncRNA downstream 50966 51860329 ~ 51862186 (-) True G1386713
TU1583735 lncRNA downstream 60365 51849815 ~ 51852787 (-) True G1386716
TU1583832 lncRNA upstream 2050 51917949 ~ 51918161 (-) True G1386804
TU1583834 lncRNA upstream 6532 51922431 ~ 51922697 (-) True G1386806
TU1583873 lncRNA upstream 52680 51968579 ~ 51970474 (-) True G1386842
TU1583818 lncRNA upstream 62500 51978399 ~ 51981623 (-) False LOC110492226
TU1583816 lncRNA upstream 64724 51980623 ~ 51981623 (-) False LOC110492226
XM_036947183.1 mRNA downstream 174860 51721970 ~ 51738292 (-) True LOC110492221
XM_021566323.2 mRNA downstream 177592 51721970 ~ 51735560 (-) False LOC110492221
XM_036945783.1 mRNA downstream 195195 51690883 ~ 51717957 (-) True LOC110491091
XM_021566322.2 mRNA downstream 309182 51522349 ~ 51603970 (-) True LOC110492220
XM_021566316.2 mRNA downstream 795302 51113591 ~ 51117850 (-) False dffb
XM_021566355.2 mRNA upstream 64715 51980614 ~ 51990025 (-) False LOC110492226
XM_021566356.2 mRNA upstream 64715 51980614 ~ 51990025 (-) False LOC110492226
XM_021566367.2 mRNA upstream 82659 51998558 ~ 52063138 (-) False LOC110492229
XM_036947198.1 mRNA upstream 82659 51998558 ~ 52069190 (-) False LOC110492229
XM_036947199.1 mRNA upstream 82659 51998558 ~ 52069191 (-) False LOC110492229
TU1582822 other downstream 784504 51090645 ~ 51128648 (-) True G1385888
TU1582837 other downstream 798087 51113403 ~ 51115065 (-) True dffb
TU1582569 other downstream 857091 51055631 ~ 51056061 (-) True G1385645
TU1581769 other downstream 1847335 50064821 ~ 50065817 (-) True G1384875
TU1581430 other downstream 2193613 49603118 ~ 49719539 (-) True LOC110491086
TU1583828 other upstream 67235 51983134 ~ 51989995 (-) True LOC110492226
TU1585179 other upstream 502977 52418876 ~ 52428759 (-) True spen
TU1585247 other upstream 655811 52571710 ~ 52572307 (-) True LOC110492250
TU1585503 other upstream 1116033 53031932 ~ 53032921 (-) True G1388236
TU1585952 other upstream 1814438 53730337 ~ 53732915 (-) True LOC110492299

Expression Profile