RNA id: TU1585674


Basic Information

Item Value
RNA id TU1585674
length 654
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1388375
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53299324 ~ 53299977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacttaatataatacatcaataaaatcaatttagcctcaagtaaataatgaaacatgttcaatttggtttaaataatgtaaaaacaaagtgttggagaagaaagtaaaagtgcaatatgttccatgtaaaatatgtgccatgtaagaaagctaacgtttcagttccttgctcagaacatgagaaagctggtggttccttttaacatgagtcttcaatattcccaggtaagaagttttaggttgtagttattataggaattataggactatttccctctataccatttgtatttcattaacctttgactattggatgttcttatcggcactttagtattgccagtgtaacagtatagcttccgtccctctcctcgctcctccctgggctcgaaccagcaacacaacaacagccaccatcgaagcagcgttacccatgcagagcaaggggaacaaccacagGCTCAGAGAGAGTGACGTGTGAAacctattagcgcgcgctaactagccagccatttcacttcggttacaccagcctcatttcgggagttgataggcttgaagtcataaacagcgcaatgcttgacgcacaacgaagagctgctggcaaaacgcacgaaagtgctgtttgaatgaatgtttacgtgcctgcttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585615 lncRNA downstream 19033 53276319 ~ 53280291 (-) True LOC110492280
TU1585647 lncRNA downstream 41636 53256419 ~ 53257688 (-) True G1388354
TU1585642 lncRNA downstream 44024 53255090 ~ 53255300 (-) True G1388352
TU1585641 lncRNA downstream 44339 53254729 ~ 53254985 (-) True G1388351
TU1585619 lncRNA downstream 71853 53227156 ~ 53227471 (-) True G1388333
TU1585676 lncRNA upstream 2026 53302003 ~ 53302208 (-) True G1388377
TU1585677 lncRNA upstream 2451 53302428 ~ 53302760 (-) True G1388378
TU1585680 lncRNA upstream 15848 53315825 ~ 53316414 (-) True G1388381
TU1585692 lncRNA upstream 49719 53349696 ~ 53350276 (-) True G1388393
TU1585693 lncRNA upstream 50407 53350384 ~ 53350597 (-) True G1388394
XM_021566473.2 mRNA downstream 2038 53290006 ~ 53297286 (-) True LOC110492284
XM_021566468.2 mRNA downstream 18739 53263801 ~ 53280585 (-) False LOC110492280
XM_036947242.1 mRNA downstream 18745 53263801 ~ 53280579 (-) False LOC110492280
XM_036947241.1 mRNA downstream 18746 53263801 ~ 53280578 (-) False LOC110492280
XM_021566470.2 mRNA downstream 18751 53263801 ~ 53280573 (-) False LOC110492280
XM_021566474.2 mRNA upstream 3364 53303341 ~ 53313558 (-) False LOC110492285
XM_021566475.2 mRNA upstream 3364 53303341 ~ 53313558 (-) False LOC110492285
XM_021566476.2 mRNA upstream 3364 53303341 ~ 53313558 (-) False LOC110492285
XM_021566478.2 mRNA upstream 3364 53303341 ~ 53313558 (-) True LOC110492285
XM_021566480.2 mRNA upstream 24347 53324324 ~ 53349459 (-) False LOC110492286
TU1585503 other downstream 266403 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 727017 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 870565 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1309329 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2184259 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 430360 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 1244751 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1684841 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2524182 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2764526 56064503 ~ 56064862 (-) True G1391586

Expression Profile