RNA id: TU1585677


Basic Information

Item Value
RNA id TU1585677
length 333
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1388378
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53302428 ~ 53302760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGAGGACTTAATTCTTgctgcggatatggctgggacaatgctgggggtgAGGGATGCCCAAAAAATTATAGACTGTCTTCATCAAACACTGTTTCATGACACTTCAGTGACATggcagatgttttgaaacaattactgtttcgcgtacaagccagtgaattataagcgttacagctggatgagtcgaCGGACGTGGCCGGCcgggcacagctcctggtatatgtccgtttaTGGGGCGTCAATTAACCCATGTATAGTCTAAACATTCTGTATACTCTCCTTGTCCTAAGCGTCAAAAATGACCTTTCACTAAACCCCTCAAATAAAGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585676 lncRNA downstream 220 53302003 ~ 53302208 (-) True G1388377
TU1585674 lncRNA downstream 2451 53299324 ~ 53299977 (-) True G1388375
TU1585615 lncRNA downstream 22137 53276319 ~ 53280291 (-) True LOC110492280
TU1585647 lncRNA downstream 44740 53256419 ~ 53257688 (-) True G1388354
TU1585642 lncRNA downstream 47128 53255090 ~ 53255300 (-) True G1388352
TU1585680 lncRNA upstream 13065 53315825 ~ 53316414 (-) True G1388381
TU1585692 lncRNA upstream 46936 53349696 ~ 53350276 (-) True G1388393
TU1585693 lncRNA upstream 47624 53350384 ~ 53350597 (-) True G1388394
TU1585663 lncRNA upstream 96379 53399139 ~ 53406183 (-) False G1388364
TU1585660 lncRNA upstream 96391 53399151 ~ 53406183 (-) True G1388364
XM_021566473.2 mRNA downstream 5142 53290006 ~ 53297286 (-) True LOC110492284
XM_021566468.2 mRNA downstream 21843 53263801 ~ 53280585 (-) False LOC110492280
XM_036947242.1 mRNA downstream 21849 53263801 ~ 53280579 (-) False LOC110492280
XM_036947241.1 mRNA downstream 21850 53263801 ~ 53280578 (-) False LOC110492280
XM_021566470.2 mRNA downstream 21855 53263801 ~ 53280573 (-) False LOC110492280
XM_021566474.2 mRNA upstream 581 53303341 ~ 53313558 (-) False LOC110492285
XM_021566475.2 mRNA upstream 581 53303341 ~ 53313558 (-) False LOC110492285
XM_021566476.2 mRNA upstream 581 53303341 ~ 53313558 (-) False LOC110492285
XM_021566478.2 mRNA upstream 581 53303341 ~ 53313558 (-) True LOC110492285
XM_021566480.2 mRNA upstream 21564 53324324 ~ 53349459 (-) False LOC110492286
TU1585503 other downstream 269507 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 730121 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 873669 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1312433 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2187363 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 427577 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 1241968 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1682058 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2521399 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2761743 56064503 ~ 56064862 (-) True G1391586

Expression Profile